Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1817 ATGGACGCCACTTGGAGGCCGAAGCGTGAAGTAATGGCCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTGCCTATTAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGACGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCATCATCATCATCATCTTCAAAAATGTTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAAGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATTTTCAATAATAACAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCAGGATGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCAACCTCTTCATGTAA 969 36.64 MDATWRPKREVMAFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSSSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNNNNIINEDNSQCFSSSTTIHDQDEEDDEEMKYLLSDCSFSSTNCNLFM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31602814 31604489 - CePI673135_06g018170.1 Cec06g1817 206554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1817 322 Coils Coil 218 238 - -
Cec06g1817 322 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cec06g1817 322 MobiDBLite consensus disorder prediction 108 147 - -
Cec06g1817 322 PANTHER PROTEIN RKD4 134 278 IPR044607 GO:0003700(InterPro)
Cec06g1817 322 MobiDBLite consensus disorder prediction 112 133 - -
Cec06g1817 322 Pfam RWP-RK domain 151 198 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1817 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1803 Cec-Chr4:36811985 Cec06g1817 Cec-Chr6:31602814 6.10E-16 transposed
Cec05g1073 Cec-Chr5:9497868 Cec06g1817 Cec-Chr6:31602814 6.60E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1817 . 149 267 AtRKD Transcription Factor Family AT1G18790 73.1 3.0e-40 162.5
Cec06g1817 . 151 263 AtRKD Transcription Factor Family AT1G74480 70.8 3.1e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29827 PF02042 RWP-RK 5.90E-21 No_clan Cec TF