Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1817 ATGGACGCCACTTGGAGGCCGAAGCGTGAAGTAATGGCCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTGCCTATTAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGCATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGACGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCATCATCATCATCATCTTCAAAAATGTTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAAGCTGCTAAAGAGCTTAATGTGGGACTTACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTGAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATTTTCAATAATAACAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTGTTTCTCTTCCTCCACCACCATTCATGATCAGGATGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCAACCTCTTCATGTAA 969 36.64 MDATWRPKREVMAFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSSSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIEKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGIIFNNNNNNNNIINEDNSQCFSSSTTIHDQDEEDDEEMKYLLSDCSFSSTNCNLFM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31602814 31604489 - CePI673135_06g018170.1 Cec06g1817 206554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1817 322 Coils Coil 218 238 - -
Cec06g1817 322 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cec06g1817 322 MobiDBLite consensus disorder prediction 108 147 - -
Cec06g1817 322 PANTHER PROTEIN RKD4 134 278 IPR044607 GO:0003700(InterPro)
Cec06g1817 322 MobiDBLite consensus disorder prediction 112 133 - -
Cec06g1817 322 Pfam RWP-RK domain 151 198 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1803 Cec-Chr4:36811985 Cec06g1817 Cec-Chr6:31602814 6.10E-16 transposed
Cec05g1073 Cec-Chr5:9497868 Cec06g1817 Cec-Chr6:31602814 6.60E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29827 PF02042 RWP-RK 5.90E-21 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1817 - - - 0.0