Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1830 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGTCTCTTTTATGGGGGACTTGGAAAAGCCCTCCATGGAAACTCTCTCAGTCCCATCAGCTTCTAATTCAGCTTGGAAGGAAGAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTAGAGAGGAAAAAAAATCAACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACCCACCAAAACAAGAACACCACTTCTTCCTCCTCACTAACTAAATTAGATCATCAAAAAATCTTAGATCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGTTCGGTGTGATACTCCAACGATGAATGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGGGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGGAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCTGCCTCGATGCTCCTCTCGGGTGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCGCCGCCGCCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTGTAACAACACCAATTCAAAGCAATTCTACTGGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCCACTTCCTCCTCCTTCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTATCCCCCAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTTATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAATTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCCGCCCCCGCCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGACGGGTCCTCCAACTTCCAGCTTAGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1716 43.36 MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKVSFMGDLEKPSMETLSVPSASNSAWKEEDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQIREEKKSTQTNGSTINNIDHEVEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPSSLPPPPIGEDEVSQQNPPKKARVCVRVRCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTAAAAAANLHGMNMYLCNNTNSKQFYWSNSSMLSSSLNHPTITLDLTSNPPSTSSSFSPFHKNIPSINNSYPPKYPFTSLDFGSSQPNFMSWNNNNNSGYQAYSNISKNNAIIGMPSDFAKQFPLHTNIYQAYLQQFSKSSTPPPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGETGPPTSSLVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31720774 31725638 - CePI673135_06g018300.1 Cec06g1830 206567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1830 571 MobiDBLite consensus disorder prediction 186 238 - -
Cec06g1830 571 MobiDBLite consensus disorder prediction 527 571 - -
Cec06g1830 571 MobiDBLite consensus disorder prediction 1 31 - -
Cec06g1830 571 MobiDBLite consensus disorder prediction 533 571 - -
Cec06g1830 571 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1830 571 MobiDBLite consensus disorder prediction 47 71 - -
Cec06g1830 571 FunFam probable WRKY transcription factor 31 236 313 - -
Cec06g1830 571 Coils Coil 65 120 - -
Cec06g1830 571 SUPERFAMILY WRKY DNA-binding domain 243 312 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1830 571 SMART WRKY_cls 251 311 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1830 571 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 58 529 IPR044810 GO:0003700(InterPro)
Cec06g1830 571 Pfam WRKY DNA -binding domain 252 310 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec06g1830 571 Gene3D WRKY domain 236 313 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0213 Cec-Chr2:2062376 Cec06g1830 Cec-Chr6:31720774 1.10E-36 dispersed
Cec05g1163 Cec-Chr5:10549420 Cec06g1830 Cec-Chr6:31720774 1.10E-40 dispersed
Cec06g1830 Cec-Chr6:31720774 Cec10g1303 Cec-Chr10:27232583 1.20E-22 dispersed
Cec01g1536 Cec-Chr1:29948564 Cec06g1830 Cec-Chr6:31720774 3.20E-66 wgd
Cec04g2139 Cec-Chr4:39244737 Cec06g1830 Cec-Chr6:31720774 9.00E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29832 PF03106 WRKY 1.30E-23 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1830 - - - 0.0