Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1840 ATGCAATGGTGTACTCAAAACCTCGGGTTAGGGGCACAATTTCGTACAATATTAGAAGTGATGGCTTACCTCACGGGCCTAACGCGCCCCCTATTTTCCGTCCAACTTCGTAGGAAAAGAGCTCGACGCAGGGCAGAGGTGAAAAATGCAGAGATAGATGAAGGTTCAGCCGCCTCCCTTTCACTTCGCTCTTCAGCTCTAATCTTCAGCTACCCATTCAACTTCCAGATTATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCAAACAGTGCTAGATCATTTTTTCTTAGTGGATCACGATGTAATGCAGACGGGACTTCATGTACATGCCCTGAAGATGAAACTTGTGTATCCCAGAGACGGAATGCTAGAAATGAAATCCTGCCCTCACAAAAGCCATCCACCTTGGTAGCCAATAGTTCACCTAGAGTAGGACCTTTAATTGCAGAAGAAGCAGCAAAAGTAATTATATCTCACAAAACTGACAATGTTGATCTCTCAGTTTCCATACAGCAAGTTACGAACACTGGCCCCAATCACCAGAGGGGGGCAGAATGTGTAAGATATGCCAGTGGCCTTAATACTGTTCTGGATGGTGAGTGCACTTCACCAAAGATTGCAGATCAGGTTGTTAAGGCAGGTATTATGGCTGTAAACTTATTCTCTGACGTTGTGCATTTTAAAGTCCCCTTATCTGACTATGGTGGAACATTTAGCTCATCTAAAAATTGCGTGGTTGATCCTGCTCGGTCCATTACTTCTGTCAAACCCTCAAAAATCAAACATTTGAGAAGAGAGAACATTTCTAGTGTCCATTCCAGACCATCAGTTGAAATCCCTATGGATTCTAAGCCCCAAAGTAGCAGTAACCATCATGGTTCAAATTGCAAGCCCACGCAATCCAATTATGTCAAAGGCTCAAAGCAAGTTCCCGAGGCTAGAACACAAAAGTCAGTGGTATTTCACAATATCTCCTCAGACAAGTGTGATAAAAGGACTTTACCACAGAGAACAAGGGTTCATTCAAACAGCTTTACTTCACATTTCCATTCCAATGCACAGACCACATTCACAAATTCTTCTAAAAATTTGAAGAAGCTTCCAGATAATGTAAAAAGCTCGACAGGAATGGCACCAATCACTTCACCGATTTTGAATGCCCCACATGTTGTGGAGAGTGTTTCTTGCATATTGCAACAACTTAAATGGGGCCCTACTGCAGAAGAGGCTATTGGGAAATTGAACTGTTCAATAGATGCTTACCAGGCAAACCAAATTCTGAAGCGGGTAGATGACCACTCTGTTGCTCTTGGGTTCTTTTTTTGGTTAAAGCGCCTAGCTAGGTTTAGACATGATGGGCACACTTATACTACTATGATTGGCCTCCTTGGTCGTGCCAAACAGTTTGCTACTATAAATAGATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACGTATAATCGTATAATTCATAGTTATGGTCGTGCAAACTATTTGCAAGAAGCTGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTGAGCCTGATAGAGTCACCTACTGCACGCTCATTGACATTCATGCAAAATCTGGCTTTCTTGATGTTGCCATGGGCATGTATGAGAAGATGCAAGACGCTGGCCTCACTCCTGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGTAGGATGGTTGATCAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTATCGTGATATGCAACAATCAGGCTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTGGGTCATTGTGGTTTCCTTGAGGAGGCAGAAGGTATATTTATTGAGATGCAAAACAAGAACTGGGTCCCTGATGAACCTGTTTATGGTCTATTAGTTGACTTGTGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAATGCGGGTTTAAAGCCAAATGTGCCTACTTGCAATTCCTTGCTTAGTGCCTTTCTTAGGGTGCACCAACTAACAGATGCTTATCAGCTGTTACAATCCATGCTGACTTTTGGTTTAAAACCTTCTCTACAAACTTATACCTTGCTTCTCAGTTGTTGCACTGATGCGCAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACCGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCCGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGATAGAGAGAGCAAGAGGGGGCTTGTGGACGCAGTTGTAGATTTTCTTCATAAATCAGGACTCAAGGAGGAGGCAGGTTGTGTCTGGGAGGCTGCTATGCAAAAGAATGTCTATCCAGATGCTGTAAAGGAGAAAAGCTCATGTTATTGGCTCATTAACTTGCACGTCATGTCTGATGGCACTGCGGTTACAGCTTTGTCTAGGACTCTTGCTTGGTTTCGCCAGCAAATGCTTCATTTAGGTGTCGGTCCCAACCGAATTGATATTGTGACTGGATGGGGTCGGCGAAGTAAGGTCACTGGATCTTCTCTAGTGAGGCAGGCAGTTCAGGACCTGTTGAGCATTTTTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTGGGGTGTGGTGAGCCTCTAAGTAGATGGTTGAACCAATCTTATGTGGAGAGGATGCATTTGTTGTAG 2847 43.31 MQWCTQNLGLGAQFRTILEVMAYLTGLTRPLFSVQLRRKRARRRAEVKNAEIDEGSAASLSLRSSALIFSYPFNFQIMLRAKQIGSLSNSARSFFLSGSRCNADGTSCTCPEDETCVSQRRNARNEILPSQKPSTLVANSSPRVGPLIAEEAAKVIISHKTDNVDLSVSIQQVTNTGPNHQRGAECVRYASGLNTVLDGECTSPKIADQVVKAGIMAVNLFSDVVHFKVPLSDYGGTFSSSKNCVVDPARSITSVKPSKIKHLRRENISSVHSRPSVEIPMDSKPQSSSNHHGSNCKPTQSNYVKGSKQVPEARTQKSVVFHNISSDKCDKRTLPQRTRVHSNSFTSHFHSNAQTTFTNSSKNLKKLPDNVKSSTGMAPITSPILNAPHVVESVSCILQQLKWGPTAEEAIGKLNCSIDAYQANQILKRVDDHSVALGFFFWLKRLARFRHDGHTYTTMIGLLGRAKQFATINRLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQNKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLNAGLKPNVPTCNSLLSAFLRVHQLTDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQMLHLGVGPNRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLNQSYVERMHLL 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31801092 31805365 + CePI673135_06g018400.1 Cec06g1840 206577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1840 948 Pfam PPR repeat 553 585 IPR002885 -
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Cec06g1840 948 Gene3D Tetratricopeptide repeat domain 539 688 IPR011990 GO:0005515(InterPro)
Cec06g1840 948 Gene3D Tetratricopeptide repeat domain 689 759 IPR011990 GO:0005515(InterPro)
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Cec06g1840 948 Gene3D - 824 927 IPR036063 -
Cec06g1840 948 MobiDBLite consensus disorder prediction 272 317 - -
Cec06g1840 948 SUPERFAMILY SMR domain-like 846 926 IPR036063 -
Cec06g1840 948 Gene3D Tetratricopeptide repeat domain 406 536 IPR011990 GO:0005515(InterPro)
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Cec06g1840 948 SMART SMR_2 845 931 IPR002625 -
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Cec06g1840 948 SUPERFAMILY HCP-like 487 695 - -
Cec06g1840 948 PANTHER OS03G0856100 PROTEIN 250 943 - -
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Cec06g1840 948 MobiDBLite consensus disorder prediction 266 317 - -
Cec06g1840 948 Pfam PPR repeat 665 693 IPR002885 -
Cec06g1840 948 Pfam PPR repeat 455 484 IPR002885 -
Cec06g1840 948 ProSiteProfiles Smr domain profile. 848 929 IPR002625 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 665 698 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 454 488 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 524 558 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 629 663 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 559 592 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 700 732 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 594 627 IPR002885 -
Cec06g1840 948 NCBIfam pentatricopeptide repeat 489 522 IPR002885 -
Cec06g1840 948 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Cec06g1840 948 Pfam PPR repeat family 486 534 IPR002885 -
Cec06g1840 948 Pfam PPR repeat family 591 638 IPR002885 -
Cec06g1840 948 Pfam PPR repeat family 696 743 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1840 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33