Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1853 ATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAGGGTGGGAGCGCATTGGGGCTTCGTATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCACAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGTTGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCCGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG 828 43.96 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEHSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRLKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31891516 31894583 + CePI673135_06g018530.1 Cec06g1853 206590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1853 275 MobiDBLite consensus disorder prediction 47 61 - -
Cec06g1853 275 MobiDBLite consensus disorder prediction 105 144 - -
Cec06g1853 275 CDD bHLH_AtBPE_like 143 225 - -
Cec06g1853 275 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Cec06g1853 275 Gene3D - 150 224 IPR036638 GO:0046983(InterPro)
Cec06g1853 275 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983(InterPro)
Cec06g1853 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 59 230 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec06g1853 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 223 IPR036638 GO:0046983(InterPro)
Cec06g1853 275 MobiDBLite consensus disorder prediction 62 84 - -
Cec06g1853 275 MobiDBLite consensus disorder prediction 85 104 - -
Cec06g1853 275 SMART finulus 159 209 IPR011598 GO:0046983(InterPro)
Cec06g1853 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983(InterPro)
Cec06g1853 275 Coils Coil 200 220 - -
Cec06g1853 275 MobiDBLite consensus disorder prediction 47 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1678 Cec-Chr6:30365947 Cec06g1853 Cec-Chr6:31891516 6.30E-27 dispersed
Cec06g1853 Cec-Chr6:31891516 Cec08g0939 Cec-Chr8:21204990 4.10E-69 dispersed
Cec06g1853 Cec-Chr6:31891516 Cec02g0524 Cec-Chr2:4933702 9.50E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29835 PF00010 HLH 2.20E-08 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1853 - - - 0.0