Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g1853 | ATGGATCCTCCCCTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCTCGATTTGGCCTTTTGGGGGAGAGCAGGGTGGGAGCGCATTGGGGCTTCGTATGGCTAATTTGGTTCAGAATCTTGGTGGGTTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCACAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGTTGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCCGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACGTCTTAG | 828 | 43.96 | MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQNLGGFPESSTNRDGSMEESTVTEHSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRLKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGSFERTS | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31891516 | 31894583 | + | CePI673135_06g018530.1 | Cec06g1853 | 206590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g1853 | 275 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
Cec06g1853 | 275 | MobiDBLite | consensus disorder prediction | 105 | 144 | - | - | |
Cec06g1853 | 275 | CDD | bHLH_AtBPE_like | 143 | 225 | - | - | |
Cec06g1853 | 275 | FunFam | Basic helix-loop-helix transcription factor | 150 | 222 | - | - | |
Cec06g1853 | 275 | Gene3D | - | 150 | 224 | IPR036638 | GO:0046983(InterPro) | |
Cec06g1853 | 275 | Pfam | Helix-loop-helix DNA-binding domain | 157 | 204 | IPR011598 | GO:0046983(InterPro) | |
Cec06g1853 | 275 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 59 | 230 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cec06g1853 | 275 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 151 | 223 | IPR036638 | GO:0046983(InterPro) | |
Cec06g1853 | 275 | MobiDBLite | consensus disorder prediction | 62 | 84 | - | - | |
Cec06g1853 | 275 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
Cec06g1853 | 275 | SMART | finulus | 159 | 209 | IPR011598 | GO:0046983(InterPro) | |
Cec06g1853 | 275 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 203 | IPR011598 | GO:0046983(InterPro) | |
Cec06g1853 | 275 | Coils | Coil | 200 | 220 | - | - | |
Cec06g1853 | 275 | MobiDBLite | consensus disorder prediction | 47 | 144 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g1678 | Cec-Chr6:30365947 | Cec06g1853 | Cec-Chr6:31891516 | 6.30E-27 | dispersed | |
Cec06g1853 | Cec-Chr6:31891516 | Cec08g0939 | Cec-Chr8:21204990 | 4.10E-69 | dispersed | |
Cec06g1853 | Cec-Chr6:31891516 | Cec02g0524 | Cec-Chr2:4933702 | 9.50E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29835 | PF00010 | HLH | 2.20E-08 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g1853 | - | - | - | 0.0 |