Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1858 ATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCTTCTTCTTCTTCTTCTTCTCCTCCTTCATCCGCCGCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAAAGGGTGGGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGGATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTTGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTGCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTTCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACGGCAAATTTCGATCATTGTTGGACAGCGATGCCCCCAGATGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1458 45.61 MVSASTRQKNMHSLLVANLTKLTIPSSSSSSSSPPSSAAAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVGETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGDCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31937018 31939199 + CePI673135_06g018580.1 Cec06g1858 206595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1858 485 MobiDBLite consensus disorder prediction 49 72 - -
Cec06g1858 485 MobiDBLite consensus disorder prediction 54 68 - -
Cec06g1858 485 MobiDBLite consensus disorder prediction 103 132 - -
Cec06g1858 485 CDD STKc_AGC 158 416 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Cec06g1858 485 SMART serkin_6 152 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 FunFam Non-specific serine/threonine protein kinase 149 263 - -
Cec06g1858 485 Pfam Protein kinase C terminal domain 437 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 Gene3D Phosphorylase Kinase; domain 1 151 458 - -
Cec06g1858 485 Gene3D Transferase(Phosphotransferase) domain 1 240 435 - -
Cec06g1858 485 ProSitePatterns Protein kinases ATP-binding region signature. 158 189 IPR017441 GO:0005524(InterPro)
Cec06g1858 485 PANTHER RIBOSOMAL PROTEIN S6 KINASE 114 478 - -
Cec06g1858 485 ProSiteProfiles Protein kinase domain profile. 152 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 SMART pkinase_C_6 417 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 FunFam Non-specific serine/threonine protein kinase 240 435 - -
Cec06g1858 485 Pfam Protein kinase domain 154 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec06g1858 485 SUPERFAMILY Protein kinase-like (PK-like) 149 479 IPR011009 -
Cec06g1858 485 MobiDBLite consensus disorder prediction 118 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2368 Cec-Chr5:34968503 Cec06g1858 Cec-Chr6:31937018 1.70E-54 dispersed
Cec06g1858 Cec-Chr6:31937018 Cec08g1646 Cec-Chr8:27815096 1.40E-56 dispersed
Cec06g1858 Cec-Chr6:31937018 Cec02g0325 Cec-Chr2:2987582 2.40E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72107 PF00069 Pkinase 7.10E-72 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1858 K04688 - csv:101214867 876.315