Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec06g1858 | ATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCTTCTTCTTCTTCTTCTTCTCCTCCTTCATCCGCCGCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAAAGGGTGGGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGGATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTTGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTGCGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGACATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTTCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAATGGAAAAGACTGCACGGCAAATTTCGATCATTGTTGGACAGCGATGCCCCCAGATGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG | 1458 | 45.61 | MVSASTRQKNMHSLLVANLTKLTIPSSSSSSSSPPSSAAAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVGETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGDCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG | 485 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31937018 | 31939199 | + | CePI673135_06g018580.1 | Cec06g1858 | 206595 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec06g1858 | 485 | MobiDBLite | consensus disorder prediction | 49 | 72 | - | - | |
Cec06g1858 | 485 | MobiDBLite | consensus disorder prediction | 54 | 68 | - | - | |
Cec06g1858 | 485 | MobiDBLite | consensus disorder prediction | 103 | 132 | - | - | |
Cec06g1858 | 485 | CDD | STKc_AGC | 158 | 416 | IPR045270 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Cec06g1858 | 485 | SMART | serkin_6 | 152 | 416 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 279 | 291 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | FunFam | Non-specific serine/threonine protein kinase | 149 | 263 | - | - | |
Cec06g1858 | 485 | Pfam | Protein kinase C terminal domain | 437 | 474 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 417 | 484 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | Gene3D | Phosphorylase Kinase; domain 1 | 151 | 458 | - | - | |
Cec06g1858 | 485 | Gene3D | Transferase(Phosphotransferase) domain 1 | 240 | 435 | - | - | |
Cec06g1858 | 485 | ProSitePatterns | Protein kinases ATP-binding region signature. | 158 | 189 | IPR017441 | GO:0005524(InterPro) | |
Cec06g1858 | 485 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 114 | 478 | - | - | |
Cec06g1858 | 485 | ProSiteProfiles | Protein kinase domain profile. | 152 | 416 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | SMART | pkinase_C_6 | 417 | 476 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | FunFam | Non-specific serine/threonine protein kinase | 240 | 435 | - | - | |
Cec06g1858 | 485 | Pfam | Protein kinase domain | 154 | 416 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec06g1858 | 485 | SUPERFAMILY | Protein kinase-like (PK-like) | 149 | 479 | IPR011009 | - | |
Cec06g1858 | 485 | MobiDBLite | consensus disorder prediction | 118 | 132 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g2368 | Cec-Chr5:34968503 | Cec06g1858 | Cec-Chr6:31937018 | 1.70E-54 | dispersed | |
Cec06g1858 | Cec-Chr6:31937018 | Cec08g1646 | Cec-Chr8:27815096 | 1.40E-56 | dispersed | |
Cec06g1858 | Cec-Chr6:31937018 | Cec02g0325 | Cec-Chr2:2987582 | 2.40E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
72107 | PF00069 | Pkinase | 7.10E-72 | CL0016 | Cec | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec06g1858 | K04688 | - | csv:101214867 | 876.315 |