Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1867 ATGGCGATTCCCATTCCCAGCCGACAGCTGTTCATCGACGGCGAGTGGAGGGAACCAGTCCTCAAGAACCGCATCCCCATCATCAACCCCACTACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTCGAAAAGCACTTGCGAGGAATAAAGGCAAAGATTGGGCCTCTGCTCCGGGGGCTCATCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAACTTGAAGCAATAGACTGTGGAAAACCGCTGGAAGAAGCTGCATGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAACGCTCCTGTTTCTCTTCCCATGGATACATTCAAGAGCTATGTTCGTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGTCTACATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATCCTGAAGCCATCAGAACTGGCATCTGTCACCTCTTTGGAATTGGGCGAAATCTGTGAAGATGTTGGTCTTCCATCTGGTGTTTTGAATATTCTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCATTTACTGGGAGTGGTGCTACGGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACAGCATTTGGTTGCTTTTGGACAAATGGCCAGATTTGCAGTGCCACATCCCGTCTACTTGTACATGAAAACATTGCTGATGAATTCTTGGATAGGCTCGTGAAATGGTGCCAGAACATTAAGATTTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCAGGACAGTATGAGAAAATATTGAAGTTTGTCTCAACTGCTGAGCACGAAGGTGCAAAGATTCTATATGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAAAGAAGAAGTCTTTGGACCTGTTCTGTGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATCGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGATCGCGTAGCCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAGCTAGGGGAATGGGGACTTGATAATTATCTAACTGTAAAGCAGGTTACTCAATATATATCCGACGAACCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 45.77 MAIPIPSRQLFIDGEWREPVLKNRIPIINPTTEETIGSIPAATAEDVELAVDAARKALARNKGKDWASAPGAHRAKYLRAIAAKITERKSELAKLEAIDCGKPLEEAAWDMDDVAGCFEYYADLAEGLDAKQNAPVSLPMDTFKSYVRKEPIGVVGLITPWNYPLLMSTWKVAPALAAGCAAILKPSELASVTSLELGEICEDVGLPSGVLNILTGFGPEAGAPLASHPHVDKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHENIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKILKFVSTAEHEGAKILYGGVRPKHLKKGYFVEPAIITNVTTSMQIWKEEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCDRVAKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYISDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32007170 32011890 - CePI673135_06g018670.1 Cec06g1867 206604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1867 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Cec06g1867 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Cec06g1867 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Cec06g1867 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Cec06g1867 503 Pfam Aldehyde dehydrogenase family 20 485 IPR015590 GO:0016491(InterPro)
Cec06g1867 503 CDD ALDH_F10_BADH 27 487 - -
Cec06g1867 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Cec06g1867 503 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491(InterPro)
Cec06g1867 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Cec06g1867 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1867 K00130 - - csv:101213657 949.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0463 Cec-Chr6:5217173 Cec06g1867 Cec-Chr6:32007170 3.50E-57 dispersed
Cec06g1867 Cec-Chr6:32007170 Cec06g1889 Cec-Chr6:32192958 1.20E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g684 . . Bda06g00575 . Bpe12g00577 . . . . . Cma10g00151 . Car10g00142 . . . . . . . . . . . Cla06g01634 Cam06g1817 Cec06g1867 Cco06g1872 Clacu06g1775 Cmu06g1717 Cre06g2537 . . . . . . . . Blo13g00042 Blo15g00282 . . Bpe07g00817 . . Bma08g00185 . Cmo10g00162 . . . . . . Cpe18g00825 . . . . . . . . . . . . . . Lsi06g01516 Csa01g00183 Chy02g02550 Cme02g01936
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1171 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Cec02g1743 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cec06g1889 . 71 555 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cec06g1889 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G48000 76.0 3.5e-250 860.9
Cec02g1743 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cec06g1171 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.5e-160 563.1
Cec02g1743 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cec06g1889 . 50 399 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cec06g1171 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.8e-103 372.1
Cec11g1632 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 9.1e-182 633.6
Cec11g1633 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 4.0e-177 618.2
Cec11g1632 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 2.6e-176 615.1
Cec11g1633 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.5 3.8e-175 611.3
Cec02g2438 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 6.2e-117 417.9
Cec07g0979 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 5.2e-184 641.0
Cec02g2438 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.9e-157 552.7
Cec02g1968 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 6.8e-214 740.3
Cec09g1759 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cec04g1524 . 249 683 Aldehyde Dehydrogenase Gene Family AT2G14170 68.0 1.5e-180 629.8
Cec06g1867 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 2.5e-250 861.3
Cec06g1867 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-252 867.5
Cec02g1787 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.2e-269 922.5
Cec01g1535 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 1.7e-260 895.2
Cec06g0463 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 3.5e-275 944.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37