Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1888 ATGCATAACATCGCGTATTCTCGATTAGGCGGACTTCACAAATCCCTTTCTCTCTACAGAAAAGTTCCATGGTGGGATCAAATTCTGAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTCCTCGTCACTTGCTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTCATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGCCTTGGCATCGTCGTCACTTTCTTTCGCACCATCGTCGATTTCTTCTCCTTGTTTCACATTCTCATGAAGTTTCGCACTGCCTTTGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGCGACCTTGTTATGGACCCTTCCGCCATTGCTATGCGCTATATCAAGAAGGATTTTCTCATTGATCTTGCTGCTACGCTTCCCCTGCCCCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCATCAGCAGCCCATGCCAACCACACTCTTGCATTCATTGTCCTCATTCAGTATGCACCTAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCGTATAATCTCCTTCTATATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATGTAGCATCCATTCAACGTCAGGAAGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACCACGCATTCTCCTTCTTGCCAGCTTATTTTTCTGGACTGTGATAGTTTGGCTTGGCAAGAACGACAAGCTTGGCTAAGAGTTACTCATGTTCTTACAAACTGTGATGCACTAAACGATGAAAAGAAATTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTTTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGCTTAAAGAGTTTGAGTGCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTGTGATTTGCTCCTTGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGAGCTATCTGCAATCCACAACAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTACCCCTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCGATCTTGCGCTCTTTACCTCTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTTGCACAAATGGACGGTCAACTATTGGATGCCATATGCGAGCGTCTCGTCTCGTCCTTGAATACCAAAGACACATTCATAACCAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTTTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAACTGCTAACATGGGCCTTAGTCCCATCCCCTAGCCTTAGCTTCCCCTCCTCAACTCGAACTGTGAAGTCGCTGACCGAAGTCGAGGCATTTGCACTTCGAGCCGAAGATCTCAAATTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAGGAGCTTTATTACACAACAATATTGGACCAAGATTCTAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACTAGTGGCTCCAAAAAAAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTAACCAAAAACTGGCTGCACTTGACAATGATGTCACCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGAGAATTGA 2079 44.25 MHNIAYSRLGGLHKSLSLYRKVPWWDQILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVVTFFRTIVDFFSLFHILMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYIKKDFLIDLAATLPLPQIVIWFVIPALKNPSAAHANHTLAFIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQEECWKIECRKEMNTTHSPSCQLIFLDCDSLAWQERQAWLRVTHVLTNCDALNDEKKFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDGQLLDAICERLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDSSHGSEMEGEGDGETSGSKKNSKNKAQNLGITMLASKFAANTRRGVNQKLAALDNDVTSLKMPKLFKPDEPDFSAFQDEN 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32183045 32188257 + CePI673135_06g018880.1 Cec06g1888 206625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1888 692 ProSiteProfiles Adenosine to inosine editase domain profile. 33 89 IPR002466 GO:0003723(InterPro)|GO:0004000(InterPro)|GO:0006396(InterPro)
Cec06g1888 692 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Cec06g1888 692 FunFam Cyclic nucleotide-gated ion channel 1 436 554 - -
Cec06g1888 692 SMART cnmp_10 438 569 IPR000595 -
Cec06g1888 692 Gene3D Jelly Rolls 436 556 IPR014710 -
Cec06g1888 692 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Cec06g1888 692 MobiDBLite consensus disorder prediction 615 631 - -
Cec06g1888 692 Pfam Cyclic nucleotide-binding domain 461 550 IPR000595 -
Cec06g1888 692 PRINTS EAG/ELK/ERG potassium channel family signature 333 344 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1888 692 PRINTS EAG/ELK/ERG potassium channel family signature 401 408 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1888 692 PRINTS EAG/ELK/ERG potassium channel family signature 351 360 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1888 692 PRINTS EAG/ELK/ERG potassium channel family signature 94 103 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1888 692 PRINTS EAG/ELK/ERG potassium channel family signature 307 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec06g1888 692 MobiDBLite consensus disorder prediction 673 692 - -
Cec06g1888 692 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec06g1888 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 663 - -
Cec06g1888 692 Gene3D Helix hairpin bin 364 428 - -
Cec06g1888 692 Gene3D - 43 362 - -
Cec06g1888 692 MobiDBLite consensus disorder prediction 613 635 - -
Cec06g1888 692 CDD CAP_ED 438 569 IPR000595 -
Cec06g1888 692 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0106 Cec-Chr5:933282 Cec06g1888 Cec-Chr6:32183045 5.10E-25 dispersed
Cec06g1481 Cec-Chr6:28330910 Cec06g1888 Cec-Chr6:32183045 1.00E-228 dispersed
Cec06g1888 Cec-Chr6:32183045 Cec10g1481 Cec-Chr10:29194528 1.50E-181 dispersed
Cec10g1452 Cec-Chr10:28866671 Cec06g1888 Cec-Chr6:32183045 7.40E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1888 K05391 - csv:101209760 1251.11