Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1893 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCGTTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCCGCTCAGGCAAGTTTATTAAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCGGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGGGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCCGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGATGGAACGGTCTCCCCTGAACGATAAGTGTCCACATCTTGCCATTTGCAAATCCCGGCAACTGTGTAATAGTAAAGCTCGAACATTAATTTTAGATCTCAGTTCTCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCAATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTAA 1404 45.94 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQASLLREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADGHGDLESGSGLEAAENGSAHDTTVLEMERSPLNDKCPHLAICKSRQLCNSKARTLILDLSSRLFSAACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMW 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32221457 32225896 + CePI673135_06g018930.1 Cec06g1893 206630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1893 467 SMART ring_2 239 279 IPR001841 -
Cec06g1893 467 SUPERFAMILY RING/U-box 221 288 - -
Cec06g1893 467 MobiDBLite consensus disorder prediction 337 358 - -
Cec06g1893 467 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Cec06g1893 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 285 IPR013083 -
Cec06g1893 467 Pfam Ring finger domain 238 280 IPR001841 -
Cec06g1893 467 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1893 Cec-Chr6:32221457 Cec10g0668 Cec-Chr10:9327776 3.60E-09 dispersed
Cec01g1471 Cec-Chr1:29377307 Cec06g1893 Cec-Chr6:32221457 1.50E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1893 K16284 - csv:101208939 717.227