Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1893 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCGTTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCCGCTCAGGCAAGTTTATTAAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCGGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGGGCATGGTGATTTAGAGTCTGGTAGTGGTTTGGAAGCCGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGATGGAACGGTCTCCCCTGAACGATAAGTGTCCACATCTTGCCATTTGCAAATCCCGGCAACTGTGTAATAGTAAAGCTCGAACATTAATTTTAGATCTCAGTTCTCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGATACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCAATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTAA 1404 45.94 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQASLLREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADGHGDLESGSGLEAAENGSAHDTTVLEMERSPLNDKCPHLAICKSRQLCNSKARTLILDLSSRLFSAACEGRLGTCFLENLILRYHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMW 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32221457 32225896 + CePI673135_06g018930.1 Cec06g1893 206630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1893 467 SMART ring_2 239 279 IPR001841 -
Cec06g1893 467 SUPERFAMILY RING/U-box 221 288 - -
Cec06g1893 467 MobiDBLite consensus disorder prediction 337 358 - -
Cec06g1893 467 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Cec06g1893 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 285 IPR013083 -
Cec06g1893 467 Pfam Ring finger domain 238 280 IPR001841 -
Cec06g1893 467 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1893 K16284 - - csv:101208939 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1893 Cec-Chr6:32221457 Cec10g0668 Cec-Chr10:9327776 3.60E-09 dispersed
Cec01g1471 Cec-Chr1:29377307 Cec06g1893 Cec-Chr6:32221457 1.50E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0471 . 77 557 C3H Transcription Factor Family AT2G31510 77.4 3.8e-227 784.3
Cec11g0935 . 62 269 C3H Transcription Factor Family AT2G31510 79.5 1.1e-83 307.8
Cec08g0471 . 60 537 C3H Transcription Factor Family AT2G31770 58.4 3.1e-169 592.0
Cec11g0935 . 63 243 C3H Transcription Factor Family AT2G31770 60.2 1.0e-55 214.9
Cec08g0471 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 8.0e-167 583.9
Cec11g0935 . 61 228 C3H Transcription Factor Family AT2G31760 60.4 3.7e-55 213.0
Cec04g1194 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cec04g1194 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cec11g0514 . 1 226 C3H Transcription Factor Family AT3G02290 62.4 1.9e-75 279.3
Cec06g1234 . 107 411 C3H Transcription Factor Family AT1G11020 75.3 8.6e-135 476.9
Cec07g1583 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cec04g0309 . 155 515 C3H Transcription Factor Family AT5G08750 60.7 1.4e-120 429.9
Cec10g0925 . 69 499 C3H Transcription Factor Family AT3G16090 71.5 9.0e-168 587.0
Cec11g0514 . 1 225 C3H Transcription Factor Family AT5G38895 57.5 7.5e-73 271.2
Cec04g1309 . 16 225 C3H Transcription Factor Family AT1G19310 59.4 2.2e-68 255.8
Cec08g1585 . 5 166 C3H Transcription Factor Family AT1G19310 62.7 5.4e-51 198.0
Cec04g1606 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 4.3e-159 557.8
Cec08g1098 . 71 178 C3H Transcription Factor Family AT5G07040 67.6 3.0e-40 161.8
Cec06g1699 . 30 415 C3H Transcription Factor Family AT1G18470 75.1 1.5e-174 609.4
Cec01g0599 . 130 361 C3H Transcription Factor Family AT1G68200 50.6 3.7e-50 195.7
Cec08g0471 . 60 537 C3H Transcription Factor Family AT2G31770 58.4 3.1e-169 592.0
Cec11g0935 . 63 243 C3H Transcription Factor Family AT2G31770 60.2 1.0e-55 214.9
Cec08g0471 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 8.0e-167 583.9
Cec11g0935 . 61 228 C3H Transcription Factor Family AT2G31760 60.4 3.7e-55 213.0
Cec07g0092 . 1004 1351 C3H Transcription Factor Family AT2G30580 50.3 4.9e-80 295.0
Cec09g2247 . 114 346 C3H Transcription Factor Family AT5G55970 68.2 5.6e-94 341.3
Cec04g0309 . 155 515 C3H Transcription Factor Family AT5G63780 57.2 4.6e-116 414.8
Cec10g1776 . 1 426 C3H Transcription Factor Family AT3G58030 53.0 6.7e-106 381.3
Cec09g2247 . 116 415 C3H Transcription Factor Family AT4G26580 63.0 3.1e-111 398.7
Cec04g0740 . 28 497 C3H Transcription Factor Family AT5G01960 68.8 1.4e-169 592.8
Cec07g0594 . 21 483 C3H Transcription Factor Family AT5G01960 59.7 1.5e-150 529.6
Cec02g1137 . 114 268 C3H Transcription Factor Family AT2G04240 58.6 8.7e-43 170.2
Cec02g2403 . 1 242 C3H Transcription Factor Family AT5G19430 53.1 1.6e-62 236.5
Cec07g1215 . 130 585 C3H Transcription Factor Family AT5G45290 53.5 9.2e-105 377.9
Cec02g2403 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 2.0e-57 219.5
Cec06g1595 . 393 689 C3H Transcription Factor Family AT5G05810 50.9 1.1e-73 274.2
Cec10g2171 . 70 215 C3H Transcription Factor Family AT5G05830 58.2 3.1e-45 178.7
Cec11g0670 . 53 205 C3H Transcription Factor Family AT5G05830 58.2 1.5e-44 176.4
Cec04g0877 . 55 185 C3H Transcription Factor Family AT5G05830 61.1 8.7e-40 160.6
Cec06g0973 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 2.1e-96 349.7
Cec11g0514 . 1 226 C3H Transcription Factor Family AT5G15790 59.5 1.8e-73 272.7
Cec11g0702 . 495 766 C3H Transcription Factor Family AT3G55530 80.2 4.9e-115 411.0
Cec09g0649 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 2.6e-116 415.2
Cec05g0316 . 10 392 C3H Transcription Factor Family AT2G44580 53.7 3.2e-120 428.7
Cec05g1767 . 3 307 C3H Transcription Factor Family AT5G20910 63.3 1.2e-106 383.3
Cec10g0925 . 187 487 C3H Transcription Factor Family AT1G65040 69.0 3.3e-110 395.2
Cec04g1309 . 17 227 C3H Transcription Factor Family AT2G23780 61.6 1.1e-72 270.0
Cec08g1585 . 5 168 C3H Transcription Factor Family AT2G23780 53.6 2.4e-43 172.6
Cec10g1651 . 1 317 C3H Transcription Factor Family AT3G10810 53.9 4.5e-82 302.4
Cec01g0242 . 1 170 C3H Transcription Factor Family AT1G63840 55.5 9.5e-45 176.8
Cec01g0661 . 38 353 C3H Transcription Factor Family AT1G68070 65.0 1.9e-116 416.0
Cec05g0210 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.3e-88 323.6
Cec10g0360 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 7.9e-86 314.3
Cec10g0013 . 1 159 C3H Transcription Factor Family AT1G76410 55.7 4.0e-44 174.9
Cec11g1933 . 261 390 C3H Transcription Factor Family AT1G76410 54.5 1.6e-37 152.9
Cec08g1327 . 1 406 C3H Transcription Factor Family AT1G80400 53.6 2.4e-110 396.0
Cec10g0013 . 1 150 C3H Transcription Factor Family AT2G17450 56.9 4.3e-38 154.8
Cec08g0471 . 77 557 C3H Transcription Factor Family AT2G31510 77.4 3.8e-227 784.3
Cec11g0935 . 62 269 C3H Transcription Factor Family AT2G31510 79.5 1.1e-83 307.8
Cec04g1194 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 3.9e-54 208.4
Cec10g1831 . 15 161 C3H Transcription Factor Family AT2G35910 51.6 1.3e-41 166.8
Cec04g0184 . 1 307 C3H Transcription Factor Family AT2G41980 80.8 4.3e-152 534.3
Cec05g1068 . 469 726 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cec05g1067 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.3e-128 454.9
Cec02g2502 . 65 361 C3H Transcription Factor Family AT2G41980 71.8 3.7e-127 451.4
Cec01g0781 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 4.5e-125 444.5
Cec06g0130 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cec05g2910 . 220 470 C3H Transcription Factor Family AT2G41980 79.3 6.1e-122 434.1
Cec05g0645 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cec10g2042 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 7.8e-86 314.3
Cec06g1893 . 58 356 C3H Transcription Factor Family AT3G47990 71.2 1.5e-125 446.0
Cec01g1471 . 58 349 C3H Transcription Factor Family AT3G47990 70.2 6.6e-121 430.6
Cec10g0013 . 1 159 C3H Transcription Factor Family AT1G20823 57.5 1.0e-45 180.3
Cec11g1933 . 276 391 C3H Transcription Factor Family AT1G20823 60.3 7.8e-38 154.1
Cec09g1893 . 36 404 C3H Transcription Factor Family AT3G18930 54.2 8.8e-84 307.8
Cec10g0048 . 20 235 C3H Transcription Factor Family AT5G66070 76.4 1.4e-75 279.6
Cec10g2079 . 3 273 C3H Transcription Factor Family AT5G02750 53.9 8.0e-68 254.2
Cec06g1699 . 34 467 C3H Transcription Factor Family AT1G73950 67.8 1.3e-165 579.7
Cec08g0077 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.2e-39 157.9
Cec01g0661 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 3.3e-73 271.9
Cec10g0360 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002467 0 5 1 1 1 2 4 2 2 2 1 2 2 1 2 3 1 1 3 2 2 2 2 2 2 1 1 7 3 1 61