Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1897 ATGTGTCTTTATGTTACAGCAGTGCACACTCGTCTTGTTTCTGAAGTTCTAGCGCACCAGCACCACGACATGTTTGGTACATTTTGGAAGGGATTAGAGCTTGGATGTCTAGAGTTCGAATTGCAGATCTTCCTTCCATTTCCTCTTCAACTTTCAGTTTTAATGGCGTTGAATGTTCTTGCACCGCCTGAAATCAAGGCACTTTCCTTCTTGGACTCCTCCAGGTCCAGACACCTCACCAAGCTTCAAGGTGCATCATCCATTAGGGAGTGCAGAACCATAGTTCATAAAAGAATTCACTGTTCTTCACAGCCTCCTCCTCCAGCTTGGCCTGGACGAGCGATCGCAGAGCCGGGATATAAGAAATGGGAAGGCCAGAAGCCTATCTCCATTGTAGGATCCACTGGCTCCATTGGAACTCAGACATTGGATATTGTGGCAGAGAATCCTGAGAAATTTAGAGTTGTGGCACTTGCAGCTGGATCTAATGTAACTCTCCTTGCGGATCAGGTGAAAACATTTAAACCTCAATTAGTTGCTGTAAGAAATGAGTCCTTAGTTGATGAGCTCAAAGAGGCTTTGGCTGATCTTGATGAGAAACCCGAGATTATCCCTGGTGAGCAGGGAGTAATTGAGGTTGCAAGACACCCAGATGCAGTCACTGTTGTTACAGGAATAGTTGGTTGTGCTGGACTAAAGCCTACTGTTGCTGCAATTGAAGCTGGGAAAGACATAGCCTTGGCCAATAAAGAGACTCTAATTGCTGGTGGTCCCTTTGTACTTCCCCTTGCCCACAAGCACAATGTAAAGATCCTTCCCGCTGATTCAGAACATTCAGCAATATTCCAGTGTATTCAGGGATTGCCCGAGGGTGCACTCCGCCGCATTATTTTGACTGCATCTGGTGGGGCTTTCAGGGACTTGCCAGTTGAAAAGTTGAAGGACGTTAAAGTTGCAGATGCTTTAAAGCATCCTAACTGGAGCATGGGAAAGAAGATCACCGTTGACTCTGCCACTCTTTTCAACAAGGGTCTAGAAGTCATTGAAGCACACTATTTGTTTGGAGCTGACTACGATAACATTGACATTGTAATCCACCCGCAATCTATCATACATTCAATGATAGAAACACAGGATTCGTCTGTTTTAGCACAATTGGGTTGGCCCGATATGCGCTTGCCCATCCTATACACCATAACATGGCCTGACAGATTATACTGCTCTGAAGTAACTTGGCCTCGCCTTGATCTTTGCAAGCTAGGTTCACTCACATTCAAAACTCCAGACAACGTAAAATACCCATCCATGGATCTGGCCTATGCTGCTGGACGGGCGGGAGGAACCATGACTGGAGTCTTGAGTGCAGCTAATGAGAAGGCAGTGGAAATGTTTATTGATGAAAAGATCAGCTACTTGGATATTTTCAAGGTTGTGGAGCTAACATGTGACAAACATCGAAACGAATTGATCACCGCGCCTTCCCTTGAGGAGATCGTACATTACGACTTATGGGCGAGGGATTACGCTGCAAGTTTGCAGTCATCCTCTACTTTTAGTCCTGTAGCTGCATAA 1572 45.55 MCLYVTAVHTRLVSEVLAHQHHDMFGTFWKGLELGCLEFELQIFLPFPLQLSVLMALNVLAPPEIKALSFLDSSRSRHLTKLQGASSIRECRTIVHKRIHCSSQPPPPAWPGRAIAEPGYKKWEGQKPISIVGSTGSIGTQTLDIVAENPEKFRVVALAAGSNVTLLADQVKTFKPQLVAVRNESLVDELKEALADLDEKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTITWPDRLYCSEVTWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELITAPSLEEIVHYDLWARDYAASLQSSSTFSPVAA 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32281309 32291498 + CePI673135_06g018970.1 Cec06g1897 206634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1897 523 Pfam DXP reductoisomerase C-terminal domain 386 507 IPR026877 -
Cec06g1897 523 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 252 389 - -
Cec06g1897 523 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 129 257 IPR013512 GO:0070402(InterPro)
Cec06g1897 523 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 113 515 IPR003821 GO:0008299(InterPro)|GO:0030145(PANTHER)|GO:0030604(InterPro)|GO:0030604(PANTHER)|GO:0046872(InterPro)|GO:0051484(PANTHER)|GO:0070402(PANTHER)
Cec06g1897 523 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 121 275 - -
Cec06g1897 523 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 419 513 IPR036169 -
Cec06g1897 523 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 271 354 IPR013644 GO:0005515(InterPro)
Cec06g1897 523 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 127 509 IPR003821 GO:0008299(InterPro)|GO:0030604(InterPro)|GO:0046872(InterPro)
Cec06g1897 523 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 431 515 - -
Cec06g1897 523 Gene3D - 431 516 - -
Cec06g1897 523 Coils Coil 180 200 - -
Cec06g1897 523 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 129 512 IPR003821 GO:0008299(InterPro)|GO:0030604(InterPro)|GO:0046872(InterPro)
Cec06g1897 523 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 127 275 IPR036291 -
Cec06g1897 523 Gene3D - 120 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1897 K00099 - - csv:101207716 902.894
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32