Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1928 ATGAATCCTTATGACCATAGATACGCCGATCCCAATTCCTACCGCGAGCGCCGAAGTGACCTAGTGGGTTTACAGCCTGCTGCGCCACCGCCAATAGTAGGGCGTGAATCCTTGTACAAAGGCTATCAACCTCCTCCAGTTCCATACTATGGCCGAGAAAGAGGAGGCGGAGGTGCTTTACCTAATGCCGGAGGCTTCAATGCCTTCCCACGATTTCAACCTCCCGCAGGACCGTTTAATGTCGGCCGCGGTGGCAGCGGTTTCGGTAGCAGCGGTGGTGGGAGGAGGATGTTTGATTCGGGGAGGGGCGGTAGAAGGACTGGTGGGAATATTGGTTCTGGAGGTGGACGTGGTGGAGGAACGGGATTTGACGGCCGAGGTGGTGGAAGTGGGGCTGGACGTGGTGGTGGTTCTTCAAGAGGGGATTTAGATAACATAGTCCTTCCGAGTCAGAATTTTGGGAATTTGGTCCCTTTTGAAAAGAATTTCTACACTGAGTGTCCTTCTGTGCGTGCAATGACGGAGTCTGAAGTTAAGATTTACAGAGAGAGGCGTGATATTAGGGTGGAAGGATACGATGTCCCAAGACCAATTCGGAGTTTTCAGGAGGCGAATTTTCCTGCTTACTGCCTTGATGTAATTGCGAAATTGGGATTTGTTGAGCCAACTCCAATTCAGGCTCAAGGATGGCCGATGGTCTTGAAAGGAAGAGATTTGATTGGCATTGCTGAGACTGGCTCTGGGAAGACTCTGGCCTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTATCGCATGGTGAAGGTCCTATGGTGTTGGTGTTAGCACCCACCAGAGAATTAGCTGTTCAAATTCAACAAGAGGCTACTAAATTCGGGTTGCGTGCTAATATTAGAAGTACTTGCGTTTATGGTGGGGCTCCGAAGGGCCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATTGATATGCTGGAAGCTGGTCACACAAACCTGCGGCGAGTGACTTACCTTGTTTTAGATGAAGCAGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACAATCGTTAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAGAAATTGGCTAGACAATTTTTACGCAATGCATACAAGGTGATTATTGGTTCACCAGATCTTAAAGCTAACCAGTCTATAAACCAAGTCGTTGAAGTTTTGCCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTCGTTGAAGTGATGGATGGTAGTCGTATTCTGATTTTTGTGGAAACAAAAAAGGGATGTGATAAAGTAACGAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGCGATAAAAAGCAGGCTGAAAGGGACTTGGTCTTGTCAGAATTTAAGAGTGGAAGAAATCCCATAATGACAGCCACGGATGTGGCTGCAAGAGGGCTTGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGCCGAACAGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGATCTTATGAAGATACTCCGAGAAGCAGGGCAGATTGTCACCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGGCTTTGGAGGTTCTGGCACTAAATTCCGCCCTCAAGGACACAGAGGCAGCTTTGGTAATCGATCAATGGTTTCGGGATCAAATGCAATCCCTCTTGGTTTGACGTCAAGGCCTCGCTAG 1863 47.5 MNPYDHRYADPNSYRERRSDLVGLQPAAPPPIVGRESLYKGYQPPPVPYYGRERGGGGALPNAGGFNAFPRFQPPAGPFNVGRGGSGFGSSGGGRRMFDSGRGGRRTGGNIGSGGGRGGGTGFDGRGGGSGAGRGGGSSRGDLDNIVLPSQNFGNLVPFEKNFYTECPSVRAMTESEVKIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMVLKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLSHGEGPMVLVLAPTRELAVQIQQEATKFGLRANIRSTCVYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLMKILREAGQIVTPALSALASSSGFGGSGTKFRPQGHRGSFGNRSMVSGSNAIPLGLTSRPR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32676692 32680687 - CePI673135_06g019280.1 Cec06g1928 206665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1928 620 CDD DEADc_DDX5_DDX17 211 405 - -
Cec06g1928 620 Pfam DEAD/DEAH box helicase 223 393 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec06g1928 620 Gene3D - 411 579 IPR027417 -
Cec06g1928 620 Pfam Helicase conserved C-terminal domain 429 539 IPR001650 -
Cec06g1928 620 MobiDBLite consensus disorder prediction 77 144 - -
Cec06g1928 620 FunFam probable ATP-dependent RNA helicase DDX17 161 408 - -
Cec06g1928 620 MobiDBLite consensus disorder prediction 582 605 - -
Cec06g1928 620 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 351 359 IPR000629 -
Cec06g1928 620 MobiDBLite consensus disorder prediction 1 41 - -
Cec06g1928 620 FunFam ATP-dependent RNA helicase RhlB 409 582 - -
Cec06g1928 620 SMART ultradead3 218 421 IPR014001 -
Cec06g1928 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 559 IPR027417 -
Cec06g1928 620 MobiDBLite consensus disorder prediction 1 17 - -
Cec06g1928 620 CDD SF2_C_DEAD 418 548 - -
Cec06g1928 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 578 IPR001650 -
Cec06g1928 620 Gene3D - 163 409 IPR027417 -
Cec06g1928 620 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 185 567 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cec06g1928 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 405 IPR014001 -
Cec06g1928 620 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 199 227 IPR014014 GO:0003724(InterPro)
Cec06g1928 620 SMART helicmild6 458 539 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1928 K12823 - - csv:101203955 1039.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1928 Cec-Chr6:32676692 Cec07g1507 Cec-Chr7:30669075 4.20E-45 dispersed
Cec01g0071 Cec-Chr1:554795 Cec06g1928 Cec-Chr6:32676692 2.80E-51 transposed
Cec03g1856 Cec-Chr3:36901792 Cec06g1928 Cec-Chr6:32676692 2.60E-56 transposed
Cec04g0681 Cec-Chr4:26005684 Cec06g1928 Cec-Chr6:32676692 8.40E-07 transposed
Cec05g0632 Cec-Chr5:5127578 Cec06g1928 Cec-Chr6:32676692 1.00E-22 transposed
Cec05g0828 Cec-Chr5:6999458 Cec06g1928 Cec-Chr6:32676692 2.30E-30 transposed
Cec05g1385 Cec-Chr5:15398716 Cec06g1928 Cec-Chr6:32676692 8.70E-79 transposed
Cec06g0764 Cec-Chr6:8926406 Cec06g1928 Cec-Chr6:32676692 1.80E-32 transposed
Cec07g0259 Cec-Chr7:2542374 Cec06g1928 Cec-Chr6:32676692 2.30E-92 transposed
Cec07g1485 Cec-Chr7:30441452 Cec06g1928 Cec-Chr6:32676692 2.00E-182 transposed
Cec08g0752 Cec-Chr8:19251242 Cec06g1928 Cec-Chr6:32676692 4.40E-12 transposed
Cec09g0305 Cec-Chr9:2582617 Cec06g1928 Cec-Chr6:32676692 1.10E-72 transposed
Cec09g1010 Cec-Chr9:9797131 Cec06g1928 Cec-Chr6:32676692 5.20E-43 transposed
Cec09g1042 Cec-Chr9:10090466 Cec06g1928 Cec-Chr6:32676692 2.40E-47 transposed
Cec10g1163 Cec-Chr10:25397890 Cec06g1928 Cec-Chr6:32676692 5.00E-104 transposed
Cec10g1415 Cec-Chr10:28494553 Cec06g1928 Cec-Chr6:32676692 9.60E-117 transposed
Cec10g2053 Cec-Chr10:35251626 Cec06g1928 Cec-Chr6:32676692 1.50E-53 transposed
Cec11g1719 Cec-Chr11:31439958 Cec06g1928 Cec-Chr6:32676692 1.40E-56 transposed
Cec11g1946 Cec-Chr11:33552034 Cec06g1928 Cec-Chr6:32676692 4.80E-111 transposed
Cec05g1413 Cec-Chr5:15973541 Cec06g1928 Cec-Chr6:32676692 1.60E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29