Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1935 ATGGCCATGGATCCCAATCCCAAAAGTTTCCCGATCCTTTCTTACGTCATGGCCAGAATCCCCTCTCTCAGCCCTCGAACGCCGGCCACTGAATTCGACATCGAACAACCTGCATCTCCGGCCTCCCGCCGCGCTCCTTCCGATCCTTCCTCATCCTCCTCCCGAATCGTCCATGATATGCCTCATCTCTCCGACCCCAAGGTTTTGGCTTCTATGACTTCCGCTATATCTGATGTTGCTCAGACCCGATCCGTCCTCAAAACCCTTGGGGAGAGACCAGACCATGAGGCTGTTGATACTGCCAAGGCTAAGCTCGCTGAGGTAGAAGTTAATTTGTCTGCCAAGCTTCAGGAAATCGTGCTTTCGTCTAGGCCGGCGGATGTCGAGTTGCTTGAGTGGAGGGCGCATCTTGCTGAGAAAGAGAACGAGTGCCGCCAGGCGGCGGATAAAGAGAAGCAGGGGTATAAGGCAATTGTGCAATTGGATGAGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCAGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCTGAGAGAGGGCTGCAGGAGGAAGAACACTTGGATCCAGTTAGCGAGGAGGTCAATGAGGAGGTTGCGAGGATTCTTCAGGACGCGAATGAGAAGGAAATGGATCGAATTAGTCTCTCCGGGCGACGCTTGCGGTTCTTGCCTGAAGGATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGATTATCCCCGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATCTCCTGGAGTCACTGCCCGACTCAATTGGGTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGGGAACAAGTTGCATGCCCTTCCTGACACAATATGCCATTGCAGGTCTTTGGTGGAGTTGGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGGAGAAGCTTGCTATCCAGTTAAACAAGATACGCTCACTTCCCTCTTCTCTTTGTGGTATGAGCTCTTTGCGTTATCTGGATGCGCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAACTGACACAACTTGAGTATCTCAACCTAGGCAGTAATTTTACTGACCTTACTGAACTTCCACATACTTTTGGTGATTTATCCAGCCTTAAGGAACTTGATCTCAGCAATAACCAGATTCACGCTCTACCCGATACATTTGGCCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTACAATTCCACCAATGGAAGTGGTTAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAAAGATGGCTTGAAATTCTGGAAGAGGAAGATAGAAAAAGAACTCTTGAAATAGATGAACAGACGCAGACTGGATGGCTGACACGAAGCACCTCTTGGTTGAAGACTTACGTTTCTGGCGTTTCAGAGACGGTGTCTGGTATCGTTGGATCTCCCAAATCTCCAAGAGACCCGTATCTCGATCAACAGCTATAA 1572 48.03 MAMDPNPKSFPILSYVMARIPSLSPRTPATEFDIEQPASPASRRAPSDPSSSSSRIVHDMPHLSDPKVLASMTSAISDVAQTRSVLKTLGERPDHEAVDTAKAKLAEVEVNLSAKLQEIVLSSRPADVELLEWRAHLAEKENECRQAADKEKQGYKAIVQLDEMHEAYEKMLKEAEERLVKIYESAERGLQEEEHLDPVSEEVNEEVARILQDANEKEMDRISLSGRRLRFLPEGFGRIRGLVVLDISSNQLQIIPDSISGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLHALPDTICHCRSLVELDVSFNSLTYLPTNIGHELVNLEKLAIQLNKIRSLPSSLCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLGSNFTDLTELPHTFGDLSSLKELDLSNNQIHALPDTFGHLENLKKLNLEQNPLTIPPMEVVNKGPDAVRTFMSKRWLEILEEEDRKRTLEIDEQTQTGWLTRSTSWLKTYVSGVSETVSGIVGSPKSPRDPYLDQQL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32712064 32715074 + CePI673135_06g019350.1 Cec06g1935 206672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1935 523 Pfam Leucine rich repeat 221 275 IPR001611 GO:0005515(InterPro)
Cec06g1935 523 Pfam Leucine rich repeat 397 439 IPR001611 GO:0005515(InterPro)
Cec06g1935 523 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515(InterPro)
Cec06g1935 523 Coils Coil 158 185 - -
Cec06g1935 523 Coils Coil 98 118 - -
Cec06g1935 523 SMART LRR_bac_2 308 327 - -
Cec06g1935 523 SMART LRR_bac_2 332 351 - -
Cec06g1935 523 SMART LRR_bac_2 241 258 - -
Cec06g1935 523 SMART LRR_bac_2 403 422 - -
Cec06g1935 523 SMART LRR_bac_2 355 374 - -
Cec06g1935 523 SMART LRR_bac_2 285 304 - -
Cec06g1935 523 SMART LRR_bac_2 262 281 - -
Cec06g1935 523 SMART LRR_bac_2 378 399 - -
Cec06g1935 523 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515(InterPro)
Cec06g1935 523 Pfam Leucine Rich Repeat 287 308 IPR001611 GO:0005515(InterPro)
Cec06g1935 523 Gene3D Ribonuclease Inhibitor 323 390 IPR032675 -
Cec06g1935 523 Gene3D Ribonuclease Inhibitor 136 322 IPR032675 -
Cec06g1935 523 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515(InterPro)
Cec06g1935 523 Coils Coil 130 150 - -
Cec06g1935 523 SUPERFAMILY L domain-like 219 440 - -
Cec06g1935 523 MobiDBLite consensus disorder prediction 43 58 - -
Cec06g1935 523 SMART LRR_typ_2 403 425 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 309 331 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 285 308 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 378 402 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 239 261 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 426 449 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 355 377 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 332 354 IPR003591 -
Cec06g1935 523 SMART LRR_typ_2 262 284 IPR003591 -
Cec06g1935 523 PRINTS Leucine-rich repeat signature 403 416 - -
Cec06g1935 523 PRINTS Leucine-rich repeat signature 242 255 - -
Cec06g1935 523 FunFam Plant intracellular Ras-group-related LRR protein 9 140 323 - -
Cec06g1935 523 FunFam Plant intracellular Ras-group-related LRR protein 2 327 500 - -
Cec06g1935 523 PANTHER - 332 442 IPR050216 -
Cec06g1935 523 MobiDBLite consensus disorder prediction 26 61 - -
Cec06g1935 523 Coils Coil 200 220 - -
Cec06g1935 523 Gene3D Ribonuclease Inhibitor 391 450 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1935 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2810 Cec-Chr5:38414712 Cec06g1935 Cec-Chr6:32712064 8.30E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37