Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1947 ATGGCTTCTACTTCAGCCACTTCCATTTTGAAGCCTTTATCCAAGCCAGATTCCTGCTTTCTCTCTTTGCCTTCTCTATTCACCGGCAGACCCCCACACACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCAGTCTCTCCTCTTCTCATTCTTCACTCTTTTCCCCTTCAAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAGACCTCCGACTGGGCTCAAGAAGACGATACCATTACCATTGATCCAAAACTCGGCGACGATGAAGAAGCCGGTGAAGGCCCCCATTGGGAAAATCAAGAGCTCAGTGAGACTGAATCTCGTGTTTCTGATTGGGAAGGTGAAGCCGAAGGTGAAGATGATGGAGGAAGTGAAGCCGAAGGAGGAGTTTTGGAGTCGGGAGATGAAGAAGAAGAAGGTCCTTATGAAGAGCCAAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTACGATGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACATTCAACCGTTATGAGTTATCGGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCTAGAGGTTCAAGGCCAGAACGCCAACCACGAACTTTCCAACCTGCTTTCAGAATCTATGTGGGTAATCTTCCATGGGATGTAGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGAGGCCCGGGTTCTTTACGACCGGGACAGTGGGCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGAAGGAAGGGCAATCAGAGTAAATGTTGCGGAGGAAAAACCAAGGCGCAACTTCTGA 987 47.01 MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFSLSSSHSSLFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLGDDEEAGEGPHWENQELSETESRVSDWEGEAEGEDDGGSEAEGGVLESGDEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32789837 32791595 + CePI673135_06g019470.1 Cec06g1947 206684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1947 328 FunFam 31 kDa ribonucleoprotein, chloroplastic 234 328 - -
Cec06g1947 328 MobiDBLite consensus disorder prediction 54 77 - -
Cec06g1947 328 Gene3D - 234 327 IPR012677 -
Cec06g1947 328 Gene3D - 83 233 IPR012677 -
Cec06g1947 328 Pfam RNA recognition motif 246 316 IPR000504 GO:0003723(InterPro)
Cec06g1947 328 Pfam RNA recognition motif 152 221 IPR000504 GO:0003723(InterPro)
Cec06g1947 328 CDD RRM2_NsCP33_like 245 320 IPR048289 -
Cec06g1947 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 322 IPR000504 GO:0003723(InterPro)
Cec06g1947 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723(InterPro)
Cec06g1947 328 MobiDBLite consensus disorder prediction 114 145 - -
Cec06g1947 328 FunFam 31 kDa ribonucleoprotein, chloroplastic 68 233 - -
Cec06g1947 328 PANTHER OS02G0815200 PROTEIN 61 326 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cec06g1947 328 SMART rrm1_1 151 224 IPR000504 GO:0003723(InterPro)
Cec06g1947 328 SMART rrm1_1 245 318 IPR000504 GO:0003723(InterPro)
Cec06g1947 328 SUPERFAMILY RNA-binding domain, RBD 239 326 IPR035979 GO:0003676(InterPro)
Cec06g1947 328 MobiDBLite consensus disorder prediction 54 150 - -
Cec06g1947 328 SUPERFAMILY RNA-binding domain, RBD 145 238 IPR035979 GO:0003676(InterPro)
Cec06g1947 328 MobiDBLite consensus disorder prediction 78 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1947 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1043 Cec-Chr2:17602065 Cec06g1947 Cec-Chr6:32789837 1.70E-15 dispersed
Cec05g2346 Cec-Chr5:34702340 Cec06g1947 Cec-Chr6:32789837 1.70E-17 dispersed
Cec06g1947 Cec-Chr6:32789837 Cec10g2033 Cec-Chr10:35089352 1.60E-48 dispersed
Cec06g1947 Cec-Chr6:32789837 Cec10g1758 Cec-Chr10:32289890 5.10E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35