Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1968 ATGCCAAGTTCTGTTCAGCACATAACTTTTTGCTGCCGTAAGAAGTCAAATAGACACGTGGTCGACGTCCCCATCAAACTTTCCTCACTCGCGGGACGTTATCGAAGGGTTTTCGTCTTTACGGGGGTTGGTTCGCATTGCGAGCGACGGGCTCTGCTCGAGATCCAGACGACAGAAGGACTCCGTTGTCCGGATAAATTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTTCGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAACAGGTCCGACTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTCTCTTCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTGTCTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGCAATGGGCCTTCTGCTAAAAGAAGCTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACGTTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTATTTTACTGTCATAAAGCATCCTATGGATCTGGGCACTGTAAAGTCTAAGATAACTGCAGGAGAATATACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCTGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTCGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAAGTGAAGAACAACGCCAAGTACCTTCAGCCACATTTGTTCCTAAGGAAACTGAAAGTACTCTGGCAGTGCCACCTTCAAAAAAGACAAAAATCCCTACAAATGACCCTGATGTTCAGCCAACTAGTGTGGTAAGAATCATGACCGAGCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGGAAGCTATTAGACGATTATATGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCGTAACGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTAGACATTGTTGGTGGGAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTTCGTAGGGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCGGAAGCAAAATGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGGTATTGATCTAGTTGAGCAAACCACCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTCTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAGAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAGGAACTTGAAAGACAACAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCGGCCGAAGCTAAGAAGAAAAGAGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTGGAGATGCTTAGGGCTTCCAACGATGAGCATCTACCGAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAAAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAGCTTGGGTTGTACATGAAGATGGACGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAGCAAACGATGTTGAAGAAGGGGAAATCGATTAG 2559 43.92 MPSSVQHITFCCRKKSNRHVVDVPIKLSSLAGRYRRVFVFTGVGSHCERRALLEIQTTEGLRCPDKLLGINPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGFDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLSEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTSEEQRQVPSATFVPKETESTLAVPPSKKTKIPTNDPDVQPTSVVRIMTEQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKRTKAEPCVVELRNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDRKQNELGDLEIGNYEENGIDLVEQTTQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKMDEEDEEEESEPPQSVNKPANDVEEGEID 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32946020 32953041 - CePI673135_06g019680.1 Cec06g1968 206705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1968 852 MobiDBLite consensus disorder prediction 514 597 - -
Cec06g1968 852 FunFam Transcription factor GTE4 252 387 - -
Cec06g1968 852 CDD Bromo_plant1 277 374 IPR037377 -
Cec06g1968 852 MobiDBLite consensus disorder prediction 391 423 - -
Cec06g1968 852 SUPERFAMILY Bromodomain 256 382 IPR036427 GO:0005515(InterPro)
Cec06g1968 852 Pfam Bromodomain 280 364 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 Coils Coil 704 752 - -
Cec06g1968 852 Pfam Bromodomain extra-terminal - transcription regulation 431 492 IPR027353 -
Cec06g1968 852 Coils Coil 178 198 - -
Cec06g1968 852 MobiDBLite consensus disorder prediction 794 813 - -
Cec06g1968 852 ProSiteProfiles Bromodomain profile. 288 360 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 MobiDBLite consensus disorder prediction 780 852 - -
Cec06g1968 852 Gene3D - 258 393 IPR036427 GO:0005515(InterPro)
Cec06g1968 852 MobiDBLite consensus disorder prediction 214 265 - -
Cec06g1968 852 PRINTS Bromodomain signature 341 360 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 PRINTS Bromodomain signature 307 323 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 PRINTS Bromodomain signature 291 304 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 PRINTS Bromodomain signature 323 341 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 ProSiteProfiles NET domain profile. 421 502 IPR027353 -
Cec06g1968 852 SMART bromo_6 269 379 IPR001487 GO:0005515(InterPro)
Cec06g1968 852 MobiDBLite consensus disorder prediction 563 596 - -
Cec06g1968 852 MobiDBLite consensus disorder prediction 690 751 - -
Cec06g1968 852 MobiDBLite consensus disorder prediction 633 660 - -
Cec06g1968 852 PANTHER TRANSCRIPTION FACTOR GTE8 154 831 IPR052442 -
Cec06g1968 852 Gene3D - 426 502 IPR038336 -
Cec06g1968 852 MobiDBLite consensus disorder prediction 631 666 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1968 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2119 Cec-Chr4:39092402 Cec06g1968 Cec-Chr6:32946020 1.40E-39 dispersed
Cec04g2287 Cec-Chr4:40495369 Cec06g1968 Cec-Chr6:32946020 1.20E-09 dispersed
Cec06g1968 Cec-Chr6:32946020 Cec10g0994 Cec-Chr10:22436011 4.20E-48 dispersed
Cec05g1486 Cec-Chr5:18438481 Cec06g1968 Cec-Chr6:32946020 8.20E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47