Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1972 ATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATACTCTGTTTCATGTCCATGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCTGAAGGGCTCATGACTGACGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGAAGGTAAGAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTTGTTCTGGAGCTGCTTCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTCTAGATAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCGTGGCATTTCCCTGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATTGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCCATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTTTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTTGGTGCGGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTGATTTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAATAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAAAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATGTGAATGGCAAAGTTGAAGACAGGCCAAGTGCGACTGAAAACGGTGATGTTTCAGAGGATACAAAATCAGAAAAGAAGAAAAAGGAGAAGCGAAAGTTGGATAGGGAAACAGAGGAGCAGCAGCAGGCTGCAGAAATCGTAAATGGAGTAAACGGGGAGGAGGAATCTGGCAAGAATAAGAAGAAAAAGAAGAGCAAGGATGAAAATAAGGGGGATGATCATATTGCTGCAGAAGATGCTGTAGAAATGCCCCTTGTGGCTGTTTTTGGTCTCCGACCTCTATATTTTTGTCCATCAGCAAAACTTATGCCAATATGCACGGTTGAAGAAGAAGACGACGACGACGACGACGACCAAACAGCCATGGCCAGTAGTTCTGGATCAGCGTGCTTAGAAGATGTCCCTTCTATCCATCTCATGACCGAGCTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAGTACTGCTTGTGTCACTTGGCAACTGGTGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTGTTAAGGCTAAGCAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGAGGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCCAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGGATGCTAAAATTGATAAGGTGCTTAATTTTTCGATTGATGATGCGATCTTGGAGGAGAGGATTACTGGACGATGGATACACCAAGCGAGCGGAAGGTCTTATCACACAAAATTTGCTCCTCCAAAGGTTGCTGGTGTCGATGATGTAACGGGAGAACCTTTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAACCGGTGATTGATTACTATTCCAAGAAGGAAATTGTTGCAGATCTTCAAGCAGAGAAGCCTCCCAAACAGCCCCCATTGGAATTGCATTGCTATTTGAATAGATGCTTTCAATCCGATTCACTTGCTGATTTCTGGCCAACTTTATTCCTGCTTCACCCAGTCTGCATCCTGGCCTTTGGTTGGGAATCAATTAGATCGGAGACAATTTTCCAATAG 2601 44.33 MTSTYLLYESASGYTLFHVHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANVNGKVEDRPSATENGDVSEDTKSEKKKKEKRKLDRETEEQQQAAEIVNGVNGEEESGKNKKKKKSKDENKGDDHIAAEDAVEMPLVAVFGLRPLYFCPSAKLMPICTVEEEDDDDDDDQTAMASSSGSACLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKQAMDKGELVSDDLVVGIIEEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQDAKIDKVLNFSIDDAILEERITGRWIHQASGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKEIVADLQAEKPPKQPPLELHCYLNRCFQSDSLADFWPTLFLLHPVCILAFGWESIRSETIFQ 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32981289 32988977 - CePI673135_06g019720.1 Cec06g1972 206709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1972 866 FunFam Nucleolar protein 56 141 299 - -
Cec06g1972 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 805 IPR027417 -
Cec06g1972 866 MobiDBLite consensus disorder prediction 515 536 - -
Cec06g1972 866 FunFam Nucleolar protein 56 300 412 - -
Cec06g1972 866 NCBIfam adenylate kinase 617 818 IPR006259 GO:0004017(InterPro)|GO:0005524(InterPro)|GO:0016776(InterPro)
Cec06g1972 866 Pfam Adenylate kinase, active site lid 742 777 IPR007862 GO:0004017(InterPro)
Cec06g1972 866 MobiDBLite consensus disorder prediction 434 536 - -
Cec06g1972 866 SUPERFAMILY Nop domain 164 413 IPR036070 -
Cec06g1972 866 Gene3D Nop domain 300 412 IPR042239 -
Cec06g1972 866 Pfam Adenylate kinase 620 805 - -
Cec06g1972 866 MobiDBLite consensus disorder prediction 434 451 - -
Cec06g1972 866 PRINTS Adenylate kinase signature 619 632 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cec06g1972 866 PRINTS Adenylate kinase signature 792 806 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cec06g1972 866 PRINTS Adenylate kinase signature 775 790 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cec06g1972 866 PRINTS Adenylate kinase signature 696 712 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cec06g1972 866 PRINTS Adenylate kinase signature 647 661 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cec06g1972 866 FunFam Adenylate kinase mitochondrial 616 828 - -
Cec06g1972 866 Gene3D - 589 819 IPR027417 -
Cec06g1972 866 SMART NOSIC_2 171 223 IPR012976 -
Cec06g1972 866 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Cec06g1972 866 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Cec06g1972 866 Gene3D - 142 299 - -
Cec06g1972 866 Coils Coil 484 507 - -
Cec06g1972 866 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Cec06g1972 866 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 5 530 IPR045056 GO:0030515(InterPro)|GO:0030515(PANTHER)|GO:0031428(PANTHER)|GO:0031428(InterPro)|GO:0032040(PANTHER)|GO:0032040(InterPro)
Cec06g1972 866 ProSitePatterns Adenylate kinase signature. 696 707 IPR033690 -
Cec06g1972 866 MobiDBLite consensus disorder prediction 460 502 - -
Cec06g1972 866 CDD ADK 617 817 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
Cec06g1972 866 Hamap Adenylate kinase [adk]. 616 828 IPR000850 GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0019205(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1972 K14564 - - csv:101216223 934.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1972 Cec-Chr6:32981289 Cec11g0374 Cec-Chr11:3936155 1.80E-30 dispersed
Cec02g1708 Cec-Chr2:34807982 Cec06g1972 Cec-Chr6:32981289 3.70E-84 transposed
Cec03g0350 Cec-Chr3:3902472 Cec06g1972 Cec-Chr6:32981289 8.30E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45