Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g1979 ATGGTAATGGCAGCGACAGAGGAAAGTCCGAGAAGCCCAGAGGCTAAGGTGGGGATGCAAGTAGAAGATTTATGGGATATTCAAGAACCGCAGCTCAGTCCTACTGAAAAGCTTAATGCTTGCTTTGAAAGCATCCCTGTTTCTGCCTTTCCTCCTGCCCCTTCTCATCAAGGAATTGAGATAAAATCGGACAGCAGTTTAGCTGAAGCGGTTCAAATTTTGGCTGAACATAAGATCCTCAGTGCGCCTGTGGTGGACGTGGATGCACCTGATCATGCGAGTTGGATTGATAGATACATTGGTATTGTTGAGTTTGCTGGCATTGTTGTTTGGATTCTTCATCAGTCGGAACCTCCATCCCCGAGAAGTCCTAGTGATGGAAGTGCTCTGGCTGCAGCAACAAATGGTGTGATATCTCCTTTAGAACAGCAGGTATTGGGCCCGGAATCCGCTGCAGCGACCTCGGGAAGCTTTTTTGAATCCTTAACATCCTCTGAATTGTACAAGAGCACACAGGTGCGAGATATTTCGGGATCTTTCCGTTGGGCCCCGTTTCTTGCTTTGCAGACGTCGAATTCCTTCTTGACCATGCTCTTGCTGTTATCAAAGTACAAAATGAAGAGCATACCAGTGGTGGACTTAGGGGAGGGAAAGATTGAGAACATCATCACACAATCAGCTGTGATTCACATGTTAGCAGAATGTGCGGGGCTTCAATGGTTTGAAAGATGGGGAACAAAGACGCTTTCCGAGCTCGGTCTTCCTATGATGTCACCGGCGTCTATTGTCAAGGTGTACGAGGACGAGCCCGTTCTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTATACCTGTTATTGAAAGGGGTGGTAGGGCAGTAGGCAACATTAGTTTAAGAGATATTCATTTCTTGCTCACTGCACCAGAAATCTATCACGATTACAGATCGATAACGGCGAAAAACTTTCTGACTGCGGTCAGAAACTACTTAGAGAAGCATGAAGAGTTGCTGAGCAACATGATTACGTGCAAGAAGGACGACACAATAAAGGATCTGATTTTGATGCTTGACTCCAAGAAGATCCACCGTGTGTATGTAGTTGACAATGATGGCAATCTGGAAGGAGTGATCACTCTCAGAGACATCATCTCGAGGCGGTTAATATTCGATACGATATCACGAAGCGAGCGAACTGGAAGACTGCCTTCATTTCGAACCATCACGAATTGCGCGAAGATGGCACCGCATGACGTTCGCCGTCCACACAAACGACCGGCGATCTCCGATCAGCAAAAGCGGCGGGAACTTTCTTTGCAACGGCAACAGCAGAATCGCCGCGACGCTCAGCAACAAGCTCGTTCCTTAGCCTCCACTCTCCTCTCCCTCTCGTCCTCATTCAACGAGCCTAGTACCTCCGAGCCGGTGCTGGAAATTGAACTGAACGGACTCGATTCCGAAACGGAATGTTCTCCGGAGCTCCTACCGGAGCGTGAATTTAACGAACCTGCTCTGAAGGAGCTCGATGTTCGTCAGGCTTCCAAGCTCAAAGGTTCAGAGGCTCGTAAGTGGTTTTCGAAGCAACTTTTGCTTCCTGAGTGGATGATAGATGTTCCTGATCGACTTAGCGAAGACTGGTACGTATTTGCAAGGCCTTCCGGTAAACGGTGTTTTGTCGTTTCTTCCAATGGAACAACTATCAGTAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACAAAGAATGCATCTGGTTCCGGTCAAACATATTCAATTCTAGATTGTATATTTCATGAAACAGATCAAACGTACTACGTCATTGATATGATTTGTTGGCGTGGATATTCTCTTTATGATTGCACGGCTGAGTTTCGGTTCTTCTGGCTCAATTCCAAGCTTGTTGAAACTGGTGCTTGTGAATCACCTTCATACTATCACAAATATAGGTTCAGCTTGGTACCTGTATATACATGCGATCAAAATGGTCTCTATGCTGCTTATACAGGAGCAGCACCTTTTGTCAAGGATGGTCTATTGTTCTACAACAAGCATTCCCATTACCAGCCAGGAAATACACCACTTGCACTGGTTTGGAAGGATGAGAACTGCAGTCAATATTTTATTGACACAGATAGTAATGGACAAGTTCCAAGCCAACAGCAGCTGGTTTTGGAGCTACAAGGTGATGGAAAGGTAGCTACATCAGATGATCCTCCTGTGGACTTTGGATGCTTAGATGGTGACTTCATTGAAAAGTTAGGGTTGTCTTCAGGCAATTTATTGCGATTCACCATTGGTGACGGAGGGTTGACCATTGTGGACGGGAGGATTCAGGGGGCAGATTTACAATACACTGGCAAGGTCAATCGTGCTCGAGCCTTTGCAGATAGTTACTCCAAGGTTATGTTTCAATATGCGGCTCGTCGCTCACCTTTAAAAATAGATGATCTATTAGCATCCATCAATTCACCGAATGATGGAGGAGAACTGATGGTATTCAACGTGTTTCTTGAAACGTTGGTGAATCTTTCACTGCAAACAACTGGACTCCTTTTTGAGGTGCTGACCTTCCATCGAGGATTGTTGAGTTGGGTTTTCAATTTACTGCATCGACAAGTTGAAGGCTGGCTTAACGCAGCCAATGGAAGGAACGCAATCAGTTCTGGAGATTCTATAGGGGAGAGAATAAATATATATGCAGAAAGAAGGTAG 2745 45.65 MVMAATEESPRSPEAKVGMQVEDLWDIQEPQLSPTEKLNACFESIPVSAFPPAPSHQGIEIKSDSSLAEAVQILAEHKILSAPVVDVDAPDHASWIDRYIGIVEFAGIVVWILHQSEPPSPRSPSDGSALAAATNGVISPLEQQVLGPESAAATSGSFFESLTSSELYKSTQVRDISGSFRWAPFLALQTSNSFLTMLLLLSKYKMKSIPVVDLGEGKIENIITQSAVIHMLAECAGLQWFERWGTKTLSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGIPVIERGGRAVGNISLRDIHFLLTAPEIYHDYRSITAKNFLTAVRNYLEKHEELLSNMITCKKDDTIKDLILMLDSKKIHRVYVVDNDGNLEGVITLRDIISRRLIFDTISRSERTGRLPSFRTITNCAKMAPHDVRRPHKRPAISDQQKRRELSLQRQQQNRRDAQQQARSLASTLLSLSSSFNEPSTSEPVLEIELNGLDSETECSPELLPEREFNEPALKELDVRQASKLKGSEARKWFSKQLLLPEWMIDVPDRLSEDWYVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNASGSGQTYSILDCIFHETDQTYYVIDMICWRGYSLYDCTAEFRFFWLNSKLVETGACESPSYYHKYRFSLVPVYTCDQNGLYAAYTGAAPFVKDGLLFYNKHSHYQPGNTPLALVWKDENCSQYFIDTDSNGQVPSQQQLVLELQGDGKVATSDDPPVDFGCLDGDFIEKLGLSSGNLLRFTIGDGGLTIVDGRIQGADLQYTGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSPNDGGELMVFNVFLETLVNLSLQTTGLLFEVLTFHRGLLSWVFNLLHRQVEGWLNAANGRNAISSGDSIGERINIYAERR 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33059018 33070157 + CePI673135_06g019790.1 Cec06g1979 206716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g1979 914 ProSiteProfiles CBS domain profile. 339 399 IPR000644 -
Cec06g1979 914 Gene3D - 243 391 IPR046342 -
Cec06g1979 914 CDD CBS_pair_SF 198 304 - -
Cec06g1979 914 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 418 839 IPR017336 GO:0005634(InterPro)|GO:0005737(InterPro)|GO:0061015(InterPro)
Cec06g1979 914 ProSiteProfiles CBS domain profile. 257 317 IPR000644 -
Cec06g1979 914 ProSiteProfiles CBS domain profile. 54 120 IPR000644 -
Cec06g1979 914 Coils Coil 441 461 - -
Cec06g1979 914 SUPERFAMILY CBS-domain pair 248 387 IPR046342 -
Cec06g1979 914 MobiDBLite consensus disorder prediction 415 455 - -
Cec06g1979 914 Gene3D - 37 239 IPR046342 -
Cec06g1979 914 CDD Snurportin-1_C 526 712 IPR047857 -
Cec06g1979 914 MobiDBLite consensus disorder prediction 423 444 - -
Cec06g1979 914 CDD CBS_pair_SF 262 386 - -
Cec06g1979 914 SUPERFAMILY CBS-domain pair 30 233 IPR046342 -
Cec06g1979 914 SMART cbs_1 57 113 IPR000644 -
Cec06g1979 914 SMART cbs_1 261 309 IPR000644 -
Cec06g1979 914 SMART cbs_1 342 390 IPR000644 -
Cec06g1979 914 SMART cbs_1 184 233 IPR000644 -
Cec06g1979 914 Pfam CBS domain 257 304 IPR000644 -
Cec06g1979 914 Pfam CBS domain 341 387 IPR000644 -
Cec06g1979 914 Pfam Snurportin1, m3G cap-binding domain 530 706 - -
Cec06g1979 914 Gene3D DNA ligase/mRNA capping enzyme 408 734 - -
Cec06g1979 914 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 527 710 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g1979 K13151 - - csv:101214543 783.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2687 Cec-Chr5:37447635 Cec06g1979 Cec-Chr6:33059018 1.50E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g113 . . . . Bpe12g00482 . . . . . Cma10g00064 . Car10g00052 . Sed08g0031 . Cpe04g01615 Bhi02g00515 Tan09g2371 Cmetu02g0530 . . . . Cla06g01739 Cam06g1929 Cec06g1979 Cco06g1983 Clacu06g1885 Cmu06g1827 Cre06g2642 . . . Cone19ag0368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00059 Chy02g02660 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011602 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30