Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g2027 ATGATGACGATTGACGATGATGGTCATCCTCAATTGAGCAGCAGGCCGTACGCTTGCTTTGTTGTTTCAGCTCGTGACCCCTTCCTTTCCCTTCCCATTCCTCAATTCCAAGGCCAAGGGCCCCCTCCCCTCCTATGCTTCTCCCTTTACACAGTTGTAGAGAGAAAGCCAAAGCAACCAAATCCCAAGTTCAGGTTCAGGCTCAGGCCCAGACTGCTCTTCAACGCAGATGCAGACGGCGGTATCGCCACCCGCAACCTAGACTTTCCTTTCTTCCGATTACCTCTCTCAATTCCCTTTCCCCTCCATGGGGATTCTCTCCTCTTTCCTCCTTACTACCTAGGATTCCCTAGAATGGCCTCCTCCGAGGTTTCAATCAACCCCAGTTCCGCCTCCTTCAACGACCATGCCGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGCCCTCTCGTTTCCGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACAAGTCAAGTGGCAGACCAGCAGATGCCTGTATATAACCTTCCATGGAAGATCCTCTGCCGCGTTATTAATGTGCACTTAAAGGCCGAACCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGAATGCTGTGGACAAGGAACCCCCACCTCCTCCCCCGCGGATATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGACACGACAGCCTCCTACTCAGGAGTTGGTTGCAAAGGATTTGCATGGAACAGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCGCGTAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTAAGGCGTGCCATGAGACAACATGGCAACGTCCCATCATCAGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGATGTTCACTGTCTACTATAAACCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAACAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGACGAGACTTCTACTATTTCTCGTCCGGAGAAAGTTTCACCATGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAGAGGCCTCGATCAAATATGATATCTACATCCCCCGATTCCTCTGTTCTTACACGAGAAGGTTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGTAATGATCCAGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACTTATGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATTCAGCAGTAGTCACTGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGCCTTGCCTTCTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATCTTATCAAGGGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATATTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAAAATCCTGCCATTCCAGACCCTGCAGGACTGAGTAGAAATATGATGAACGAGGCAGCAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCCGACCTGAAGGCTGAACTATCTAGAGGTTCAAAATTGGCTGATAAATCCCTTGCCATCAATGAGGCTGATAAGTTGCAGCAACCATGCGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTTTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCCATTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGTACCTTCGATGTCAGTACCCGAGAGTTTTTGGTGCGGTACGGAAGGAGTTGAGCAGAGTAATGCAGCGAGGCCGGAAGGTTGCGGCCTTATGTTAAAGGTAGATGGTAGAAATGATGTATTGAATTTTGGACGTGCAAGCAGAAGAAGAGAACACGCTGACACGAATGGAAATTTGTTCAAAATGGGATTGCAACATGAAGCTGCTGCTGCTTCTTGGATTTCGCTACTTGAAAGCAAAGGAGACGAGAATGATGTTTCCAATGTTCTTATCATATTTATTCGCCTATATTACTACGGTGGCCCACGACACAAGTGTAAAAATTCCAGAATTTAA 3210 46.11 MMTIDDDGHPQLSSRPYACFVVSARDPFLSLPIPQFQGQGPPPLLCFSLYTVVERKPKQPNPKFRFRLRPRLLFNADADGGIATRNLDFPFFRLPLSIPFPLHGDSLLFPPYYLGFPRMASSEVSINPSSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPWKILCRVINVHLKAEPDTDEVFAQITLLPEANQDENAVDKEPPPPPPRIFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMISTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDSAVVTVNSIRKHAMDQDGKFNFLGGSSWSALPSGLSLNLVDSSQRGHIQAGDLSYQGRGNATFNGFGDHSMAHCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPILFQNQDILKPKDGNCKLFGISLNKNPAIPDPAGLSRNMMNEAADVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSIEGEEAKEIKSQAVPSMSVPESFWCGTEGVEQSNAARPEGCGLMLKVDGRNDVLNFGRASRRREHADTNGNLFKMGLQHEAAAASWISLLESKGDENDVSNVLIIFIRLYYYGGPRHKCKNSRI 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33396158 33403274 - CePI673135_06g020270.1 Cec06g2027 206764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g2027 1069 SUPERFAMILY DNA-binding pseudobarrel domain 262 394 IPR015300 -
Cec06g2027 1069 Pfam Auxin response factor 391 473 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec06g2027 1069 Pfam AUX/IAA family 827 931 IPR033389 -
Cec06g2027 1069 CDD B3_DNA 263 365 IPR003340 GO:0003677(InterPro)
Cec06g2027 1069 FunFam Auxin response factor 263 367 - -
Cec06g2027 1069 Gene3D - 428 498 - -
Cec06g2027 1069 SMART B3_2 265 367 IPR003340 GO:0003677(InterPro)
Cec06g2027 1069 Pfam B3 DNA binding domain 265 366 IPR003340 GO:0003677(InterPro)
Cec06g2027 1069 Gene3D - 839 932 - -
Cec06g2027 1069 MobiDBLite consensus disorder prediction 824 844 - -
Cec06g2027 1069 FunFam Auxin response factor 838 932 - -
Cec06g2027 1069 Gene3D - 262 367 IPR015300 -
Cec06g2027 1069 ProSiteProfiles PB1 domain profile. 843 927 IPR053793 -
Cec06g2027 1069 ProSiteProfiles B3 DNA-binding domain profile. 265 367 IPR003340 GO:0003677(InterPro)
Cec06g2027 1069 MobiDBLite consensus disorder prediction 499 539 - -
Cec06g2027 1069 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 158 933 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec06g2027 1069 SUPERFAMILY CAD & PB1 domains 840 920 - -
Cec06g2027 1069 FunFam Auxin response factor 428 500 - -
Cec06g2027 1069 MobiDBLite consensus disorder prediction 513 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2211 Cec-Chr2:39533675 Cec06g2027 Cec-Chr6:33396158 2.10E-135 dispersed
Cec04g2041 Cec-Chr4:38502579 Cec06g2027 Cec-Chr6:33396158 9.00E-89 dispersed
Cec06g2027 Cec-Chr6:33396158 Cec11g0032 Cec-Chr11:438194 1.80E-176 dispersed
Cec06g2027 Cec-Chr6:33396158 Cec09g0941 Cec-Chr9:8919860 3.70E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29853 PF02309 AUX_IAA 6.20E-12 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g2027 K14486 - csv:101206845 1600.88