Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec06g2035 ATGGGTCCAAGTGTCAAGTGTGTGAAGCTGGTGAAGTTTGATCTGAATGAGACTTTGGACTTCTGGAGAGAAGGCGTAATAAACCAAAGCAAGGTGCAGAGGGTGGTGAAAATTAAAAAAGTGGATTCGAAGCGAGGGAAGAGGCCCCTTTGTTCCGATGAGTCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAACATGACATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTAGCAAAAGCCCAGCGGTAGTTGAAGCAGATTATTGGCCAGAATCGGAATCGCAATCGCAGCGAGCAGATCATGAAGAAGAAGTGAAAAGAGAGAGTCGGCATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCCGAGGCTGCAGCACTTGCTTACGATGAAGCTGCCCTTAGATTCAAAGGCACAAAAGCCAAGCTCAACTTCCCTGAGAGGCTCACCACTCCACCCTCCTATGCCTATCATCATTCCACCTTTATGCTCAATCTCCACTCCTCAACTTCTCATCCTTCCCATCATCAGGACCACAAAAATTAA 642 48.13 MGPSVKCVKLVKFDLNETLDFWREGVINQSKVQRVVKIKKVDSKRGKRPLCSDESEEENPFPIYSARSEHDMSAMVCALGEVIRSGSSKSPAVVEADYWPESESQSQRADHEEEVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHSTFMLNLHSSTSHPSHHQDHKN 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33433079 33435893 + CePI673135_06g020350.1 Cec06g2035 206772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec06g2035 213 SMART rav1_2 121 184 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 Pfam AP2 domain 121 170 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 CDD AP2 121 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Cec06g2035 213 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 Gene3D AP2/ERF domain 120 180 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec06g2035 213 PANTHER DNA-BINDING DOMAIN 82 196 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cec06g2035 213 MobiDBLite consensus disorder prediction 98 117 - -
Cec06g2035 213 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0626 Cec-Chr2:6256031 Cec06g2035 Cec-Chr6:33433079 2.80E-26 dispersed
Cec05g1176 Cec-Chr5:10717636 Cec06g2035 Cec-Chr6:33433079 1.50E-23 dispersed
Cec06g2035 Cec-Chr6:33433079 Cec08g0740 Cec-Chr8:19134982 5.10E-27 dispersed
Cec06g2035 Cec-Chr6:33433079 Cec06g0172 Cec-Chr6:1728157 2.90E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29854 PF00847 AP2 4.60E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec06g2035 - - - 0.0