Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0213 ATGGCGGTCTCTCTTACACTACAGTTTTCCACCGCTTCTTCAATCCCTTTCCTTCTTCTTCTCATCATCTTCTTCGTTCAATCCAGTTTTGCTCGAGATGAGAGATTGCAGAGCTTCAATTCTTCCTCAATGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTCGAGCATTCGGAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACATTGGCAATTGCGGCGAAAGCATCTGGCCAACTGTGGCATTGGGTTCGGACGTAATGCGGTTGGTGGGCGTGATGGGCGATACTATGTCGTCTCCAATCCTGGTGACGACGATCCTGTCAATCCCCGACCAGGGACCCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATCGATGGGCGTGGTGCTAATGTCCATATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTTATTATTCATGGTTTGCATATTCACGACTGCAAGCGGACAGGAAATGCCATGGTTCGAAGCTCGCCAAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGTATTTCTATTTTTGGGTCAAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTTCTGATGGACTCATTGATGCTATCATGGGATCAACTGCCATCACTATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGAAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCCCCTGCGAATCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGAAACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAAGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCATCCAGTTATGCAAGAGCCTCAAGCTTGGGAGCTAAATCCTCTTCCTTGGTGGGCACCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1308 44.72 MAVSLTLQFSTASSIPFLLLLIIFFVQSSFARDERLQSFNSSSMADRYIKNEHAVDNPEEIASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPHWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSNPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKRTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAASSYARASSLGAKSSSLVGTITSNAGALSCRRGFRC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2141086 2146839 - CePI673135_07g002130.1 Cec07g0213 206992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0213 435 FunFam Pectate lyase 86 428 - -
Cec07g0213 435 SUPERFAMILY Pectin lyase-like 64 430 IPR011050 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cec07g0213 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cec07g0213 435 PANTHER PECTATE LYASE 18-RELATED 26 432 IPR045032 GO:0030570(InterPro)
Cec07g0213 435 Pfam Pectate lyase 169 350 IPR002022 -
Cec07g0213 435 Gene3D - 86 428 IPR012334 -
Cec07g0213 435 SMART amb_all 161 358 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0213 Cec-Chr7:2141086 Cec08g1811 Cec-Chr8:29105402 4.50E-171 dispersed
Cec09g2059 Cec-Chr9:37643072 Cec07g0213 Cec-Chr7:2141086 1.20E-168 transposed
Cec05g0410 Cec-Chr5:3382931 Cec07g0213 Cec-Chr7:2141086 4.20E-204 wgd
Cec06g0796 Cec-Chr6:9552578 Cec07g0213 Cec-Chr7:2141086 2.20E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0213 K01728 - csv:101207204 831.247