Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0254 ATGGGGCCGGGAGTGCCCTTATCTGGTGCTGCAAAACAGGCCGAGCTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACAAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAAAATAAAGAATATCCGGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAACCCAAAGAGTTATATGGTAGAGGAGATATGGCAGGAACTTTCTAGAGCGAAATACAGGGAGTGGGAACAAGCCTCCACCGAACGTTCATGGGAATTACAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTTGAAGGGTTCGTAAATGAAGCCAAAATTGCTCATCGGAAACAATTAAAATCACTAAGAACTGTGTTCGAAAAAGTTGCCGAGGCAGATGCGCCGTCTGAGGTGCCTGACTATCTCTGTTGTAAAATCACGCTCGATATTCTCCGCGATCCTGTTATTACTCCGAGCGGGGTTACTTATGAGAGAGCAGTGATTCTCGACCATTTTCAAAAGGTTGGTAACTTCGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACCTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAAATTAA 846 44.44 MGPGVPLSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYMVEEIWQELSRAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVNEAKIAHRKQLKSLRTVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFQKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2492177 2499189 + CePI673135_07g002540.1 Cec07g0254 207033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0254 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec07g0254 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Cec07g0254 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515(InterPro)
Cec07g0254 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec07g0254 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Cec07g0254 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Cec07g0254 281 SUPERFAMILY TPR-like 12 133 IPR011990 GO:0005515(InterPro)
Cec07g0254 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cec07g0254 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515(InterPro)
Cec07g0254 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec07g0254 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Cec07g0254 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Cec07g0254 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Cec07g0254 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Cec07g0254 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Cec07g0254 281 SUPERFAMILY RING/U-box 199 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0254 Cec-Chr7:2492177 Cec10g1844 Cec-Chr10:33283467 2.30E-06 dispersed
Cec07g0254 Cec-Chr7:2492177 Cec05g0177 Cec-Chr5:1493718 1.70E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0254 K09561 - csv:101215457 543.117