Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0286 ATGACTCTATTTTCATTCTCATTCTTGTTCGTAGTACTTCTTCAGTTATCTATTCTGTTAAATAGTCTGACTGCCAAAAACGGCGACCACCACCACCACCACCACCATGTCCGATCACCAGGACTGAACCCGAACCCGAACCCGAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTCATTTACTCGGACCCAAAAAACCACACTACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTATTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGATCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTAGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCAAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCTGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAATGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAACTTGTTTAGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTATAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGAAAGGGATCGCTTTTGATGATCGGCGGAATTGCTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGAGGTAATGGTTCTAGTATTGTGGCGGTTCCGGCTCCGACGCCAATTTCTTCACCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1224 43.71 MTLFSFSFLFVVLLQLSILLNSLTAKNGDHHHHHHHVRSPGLNPNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLAGLAQLEQLNLAHNLFSGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAKGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGNGSSIVAVPAPTPISSPSSFVAPSHL 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2825988 2827211 - CePI673135_07g002860.1 Cec07g0286 207065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0286 407 Pfam Leucine Rich Repeat 126 145 IPR001611 GO:0005515(InterPro)
Cec07g0286 407 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515(InterPro)
Cec07g0286 407 Pfam Leucine Rich Repeat 266 288 IPR001611 GO:0005515(InterPro)
Cec07g0286 407 Pfam Leucine Rich Repeat 171 192 IPR001611 GO:0005515(InterPro)
Cec07g0286 407 Pfam Leucine Rich Repeat 148 164 IPR001611 GO:0005515(InterPro)
Cec07g0286 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 393 IPR051582 -
Cec07g0286 407 SUPERFAMILY L domain-like 53 327 - -
Cec07g0286 407 Gene3D Ribonuclease Inhibitor 218 341 IPR032675 -
Cec07g0286 407 Gene3D Ribonuclease Inhibitor 53 217 IPR032675 -
Cec07g0286 407 FunFam Leucine-rich repeat extensin-like protein 1 54 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0578 Cec-Chr5:4728538 Cec07g0286 Cec-Chr7:2825988 3.90E-46 dispersed
Cec07g0286 Cec-Chr7:2825988 Cec11g0262 Cec-Chr11:2811538 8.00E-29 dispersed
Cec07g0286 Cec-Chr7:2825988 Cec06g1179 Cec-Chr6:23995130 9.10E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0578 . 32 266 Leucine-rich Repeat extension Gene Families AT1G62440 62.6 5.1e-48 189.9
Cec07g0286 . 48 376 Leucine-rich Repeat extension Gene Families AT1G62440 58.7 5.0e-43 173.3
Cec11g0262 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cec06g1179 . 60 232 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 6.1e-41 166.4
Cec06g1179 . 33 404 Leucine-rich Repeat extension Gene Families AT4G13340 76.7 2.8e-67 253.8
Cec11g0262 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 4.8e-67 253.1
Cec05g0578 . 18 368 Leucine-rich Repeat extension Gene Families AT4G13340 69.1 1.4e-55 214.9
Cec07g0286 . 40 377 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 6.3e-43 172.9
Cec06g0361 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.3e-40 165.2
Cec06g0360 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.7e-40 164.9
Cec06g0364 . 22 225 Leucine-rich Repeat extension Gene Families AT4G13340 54.9 1.7e-40 164.9
Cec06g0365 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-38 158.3
Cec06g1179 . 23 399 Leucine-rich Repeat extension Gene Families AT3G24480 74.3 1.1e-72 271.2
Cec11g0262 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 7.1e-72 268.5
Cec05g0578 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 8.7e-54 208.4
Cec07g0286 . 48 398 Leucine-rich Repeat extension Gene Families AT3G24480 58.4 1.7e-44 177.6
Cec06g0361 . 25 225 Leucine-rich Repeat extension Gene Families AT3G24480 61.2 8.5e-41 165.2
Cec06g0364 . 25 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.0 8.5e-41 165.2
Cec06g0365 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.8 3.0e-38 156.8
Cec05g0578 . 15 368 Leucine-rich Repeat extension Gene Families AT3G22800 71.3 1.4e-69 260.8
Cec07g0286 . 40 376 Leucine-rich Repeat extension Gene Families AT3G22800 63.9 1.5e-50 197.6
Cec06g1179 . 72 400 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 4.9e-38 156.0
Cec06g1179 . 46 404 Leucine-rich Repeat extension Gene Families AT5G25550 60.9 1.4e-39 161.0
Cec11g0262 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.2e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28