Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0366 ATGGTTTTTTCTTCTTCTCTCCCTTCTTATTTGGATCCTCCTAACTGGCAACCGTTGACGAATCACCAAACGGGAGGAAATGATACTGCAGAGGATTCTGGTCAAGTTTTACTACCTCCACCACCTGGGGGTGGGGGAGGTAGTGACGGTGGTGGTGTTGGAGGTGGTACTGGGTTGATTAGGCCGGTTTCGATGACTGATCGAGCCCGGTTGGCAAAGATTCCGCAGCCGGAGGCCGGCTTGAAATGCCCTAGATGTGAATCTACAAATACCAAATTTTGTTACTTCAATAACTATAATCTTTCTCAGCCTCGCCACTTTTGTAAGACTTGTCGTCGGTATTGGACACGTGGTGGTGCACTGAGGAATGTTCCGGTCGGTGGTGGTTGCCGGAGGAACAAGAGGACCAAATCCCGGAATCGGTCTAAGTCTCCGGTGGCCAGTGAACGGCAATTATTAGGTGGATCAGCTAATTCTTCTGCTGGGGTTTCACTTTCAACACAACCCCATTTGCCCTTTTTGTCTTCTTTACATAATTTCTCTAATTATGGCCTCAATTTGGGCATAATTCCGCCGCAAGCTCCTCCATCAAGCGGTGGCTCCACCACCGGAGGAGTGGATGTTCATGAATTTCAAGGTGACCATTGGAGATTACAACAACCACAACAATTCCCTCTCTTCGCTAATGATCAACAACCTAATTTGCTTTACACTTTCGAGCCACCGGAAGGCACCATGACTCGGTATAATCTTGGCGGGTTCTCTAGATTAGGGATTGAAAACGACATGGGAATGACGACGGAGGCCGGGGCGGTGAAGGTGGAGGAGAGTAAAGGAATGAACTTAGGGAAGAATTTTCAATTTTGGGTCGGTGGTGGCAGCGGCGGAAGCGACGTTAATGCATGGAGCGGCGGTGGCGGCGATCTTCATGGCTTCTCTTCATCCTCCGCCAGCCAATTATTGAGACA 968 49.28 MVFSSSLPSYLDPPNWQPLTNHQTGGNDTAEDSGQVLLPPPPGGGGGSDGGGVGGGTGLIRPVSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKSRNRSKSPVASERQLLGGSANSSAGVSLSTQPHLPFLSSLHNFSNYGLNLGIIPPQAPPSSGGSTTGGVDVHEFQGDHWRLQQPQQFPLFANDQQPNLLYTFEPPEGTMTRYNLGGFSRLGIENDMGMTTEAGAVKVEESKGMNLGKNFQFWVGGGSGGSDVNAWSGGGGDLHGFSSSSASQLLR 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3608955 3610134 - CePI673135_07g003660.1 Cec07g0366 207145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0366 322 MobiDBLite consensus disorder prediction 1 31 - -
Cec07g0366 322 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec07g0366 322 MobiDBLite consensus disorder prediction 1 61 - -
Cec07g0366 322 MobiDBLite consensus disorder prediction 125 161 - -
Cec07g0366 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 156 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g0366 322 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec07g0366 322 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec07g0366 322 MobiDBLite consensus disorder prediction 145 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0366 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0158 Cec-Chr3:1557615 Cec07g0366 Cec-Chr7:3608955 9.20E-42 dispersed
Cec04g2016 Cec-Chr4:38315407 Cec07g0366 Cec-Chr7:3608955 3.60E-26 dispersed
Cec04g2017 Cec-Chr4:38322616 Cec07g0366 Cec-Chr7:3608955 5.50E-30 dispersed
Cec07g0366 Cec-Chr7:3608955 Cec07g1478 Cec-Chr7:30364536 3.80E-26 dispersed
Cec10g0819 Cec-Chr10:15005448 Cec07g0366 Cec-Chr7:3608955 1.50E-28 transposed
Cec10g2109 Cec-Chr10:35744102 Cec07g0366 Cec-Chr7:3608955 5.10E-45 wgd
Cec02g2134 Cec-Chr2:38881337 Cec07g0366 Cec-Chr7:3608955 3.60E-43 wgd
Cec04g0967 Cec-Chr4:29333086 Cec07g0366 Cec-Chr7:3608955 8.20E-38 wgd
Cec07g0366 Cec-Chr7:3608955 Cec09g2096 Cec-Chr9:37920979 3.70E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec03g0636 . 17 181 C2C2-Dof Transcription Factor Family AT1G29160 60.2 4.5e-45 177.9
Cec04g2078 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.4e-40 160.6
Cec01g0162 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.5e-42 168.7
Cec03g0636 . 17 181 C2C2-Dof Transcription Factor Family AT2G34140 55.6 3.1e-43 171.8
Cec10g2109 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cec09g2096 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.0e-38 156.8
Cec07g0366 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 63.4 1.0e-37 154.5
Cec03g0158 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Cec01g0162 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 1.5e-44 177.2
Cec03g0158 . 1 142 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.7e-39 160.6
Cec09g2096 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.3e-36 151.0
Cec10g2109 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 1.9e-37 153.7
Cec03g0158 . 50 144 C2C2-Dof Transcription Factor Family AT3G55370 73.7 1.2e-36 151.0
Cec04g0967 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.2e-36 151.0
Cec02g2134 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 53.8 1.6e-36 150.6
Cec06g1740 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.6 1.7e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29884 PF02701 zf-Dof 4.40E-32 No_clan Cec TF