Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0374 ATGGCTGCCCTTCCTCTTACTCTTCTCCCCATTCTCCTTTCGCTTCTTACAGTCGACGCTAGGATCCCTGGAGTTTACTCCGGCGGCCAGTGGCAGAGTGCTCATGCTACTTTTTATGGCGGCAGTGACGCCTCCGGAACCATGGGAGGTGCTTGCGGTTACGGAAACTTATACAGCCAAGGCTACGGCGTAAACACGGCGGCGTTGAGTACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCCTGCTTCGAGCTTAAGTGCGCTAACGATCCACAGTGGTGCCATTCCGGCAGTCCGTCGATTTTCATCACGGCCACGAACTTTTGCCCTCCGAACTACGCTCTTCCAAGCGACAATGGCGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACAGAGCCGGAATCGTTCCCGTCTCTTATCGCAGGGTGCCATGCCGCAAGCAAGGAGGAATAAGATTCACAATCAACGGTTTCCGCTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGGGACATCGTGAAGGTCAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTTGGTCAGTCACTTTCCTTTAGGGTCACAGCCAGTGACCGTCGCACCTCCACTTCCTGGAACATCGCCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGTGTGACTTCTCTCCTTTTTCTGGTTGTACGTCGAGGTGCCTCTTGCTTCGCTGGCACCTTCAACTTCGTCTTTCGCTTTGCCTTGGGTGGAGAAATGTGACGCATCTCAACATCACGATCCTCACTGTCAGAGAGTGGCTCAATGATGGGATTGTGTATAGCCATTGGGGTAGGCTTGATGGAGGCAATGGTGGCCGACTTGGTAGTGGTGGTGGTGAGATCGATGTTAGTGGTGGACTCGGTCTGTGTGGTGGAATCGGGATGGGCGGTGGTATCAGGATCAGTGGTGGTGGTGTGTTCAGGATGGGTGGTGGTAGTGGTCTCAAGATTAGTGGTGGTAATGGTCTCGGATCGGTGATGGTATCGGTATCAATGGTGGTGGTGACATCAATATGA 1164 53.35 MAALPLTLLPILLSLLTVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKVSVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIAPSNWQFGQTFTGKNFRCDFSPFSGCTSRCLLLRWHLQLRLSLCLGWRNVTHLNITILTVREWLNDGIVYSHWGRLDGGNGGRLGSGGGEIDVSGGLGLCGGIGMGGGIRISGGGVFRMGGGSGLKISGGNGLGSVMVSVSMVVVTSI 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3761518 3765685 - CePI673135_07g003740.1 Cec07g0374 207153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0374 387 FunFam Expansin 20 159 - -
Cec07g0374 387 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cec07g0374 387 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cec07g0374 387 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cec07g0374 387 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cec07g0374 387 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cec07g0374 387 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cec07g0374 387 PANTHER EXPANSIN-A15 16 255 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 Pfam Lytic transglycolase 66 153 IPR009009 -
Cec07g0374 387 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Cec07g0374 387 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cec07g0374 387 Gene3D - 20 159 IPR036908 -
Cec07g0374 387 FunFam Expansin 163 255 - -
Cec07g0374 387 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cec07g0374 387 Gene3D - 163 255 IPR036749 -
Cec07g0374 387 SMART dpbb_1 66 153 IPR007112 -
Cec07g0374 387 CDD DPBB_EXPA_N 30 158 - -
Cec07g0374 387 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Cec07g0374 387 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cec07g0374 387 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0322 Cec-Chr1:3314083 Cec07g0374 Cec-Chr7:3761518 1.80E-74 dispersed
Cec04g1094 Cec-Chr4:30484511 Cec07g0374 Cec-Chr7:3761518 4.70E-87 dispersed
Cec07g0374 Cec-Chr7:3761518 Cec07g0569 Cec-Chr7:7096549 4.20E-104 dispersed
Cec02g0339 Cec-Chr2:3145323 Cec07g0374 Cec-Chr7:3761518 3.00E-74 transposed
Cec02g2116 Cec-Chr2:38725318 Cec07g0374 Cec-Chr7:3761518 9.00E-135 wgd
Cec03g0141 Cec-Chr3:1400137 Cec07g0374 Cec-Chr7:3761518 5.30E-135 wgd
Cec04g0951 Cec-Chr4:29183375 Cec07g0374 Cec-Chr7:3761518 2.20E-136 wgd
Cec07g0374 Cec-Chr7:3761518 Cec09g2072 Cec-Chr9:37762880 3.40E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0374 - - - 0.0