Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0476 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGATGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATTAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGTTGTTTTTGGGCTGGATGCATGCAACTCTCATTGCCAATGACCTCAGAAAGAGGAGAAAGGGTGTTGCAGTCAAGCTCCATCTTAAAAAAATTTAGGTGGACCATGATGGGTTGA 465 48.82 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERCFWAGCMQLSLPMTSERGERVLQSSSILKKFRWTMMG 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5112297 5113970 + CePI673135_07g004760.1 Cec07g0476 207255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0476 154 PANTHER CPG BINDING PROTEIN 7 117 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec07g0476 154 Pfam Alfin 10 117 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0476 K26274 - - csv:101211934 245.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0476 Cec-Chr7:5112297 Cec11g0170 Cec-Chr11:1873021 9.40E-47 dispersed
Cec10g2211 Cec-Chr10:36517318 Cec07g0476 Cec-Chr7:5112297 9.70E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0733 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.8e-114 407.9
Cec08g1020 . 9 250 Alfin-like Transcription Factor Family AT1G14510 71.1 2.8e-96 348.6
Cec11g0170 . 62 301 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Cec09g0082 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.2e-92 335.1
Cec10g2211 . 22 259 Alfin-like Transcription Factor Family AT1G14510 59.3 2.4e-79 292.4
Cec07g0476 . 8 117 Alfin-like Transcription Factor Family AT1G14510 70.5 9.3e-44 174.1
Cec11g0170 . 54 303 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Cec08g1020 . 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 2.4e-108 388.7
Cec09g0082 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 3.9e-98 354.8
Cec10g0733 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Cec10g2211 . 30 261 Alfin-like Transcription Factor Family AT5G26210 58.1 2.4e-79 292.4
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.5e-45 177.9
Cec11g0170 . 54 303 Alfin-like Transcription Factor Family AT3G42790 70.1 4.8e-101 364.4
Cec08g1020 . 1 252 Alfin-like Transcription Factor Family AT3G42790 70.5 1.8e-100 362.5
Cec09g0082 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 2.7e-96 348.6
Cec10g0733 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 5.9e-91 330.9
Cec10g2211 . 30 261 Alfin-like Transcription Factor Family AT3G42790 58.3 2.0e-78 289.3
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT3G42790 73.3 4.6e-43 171.8
Cec10g2211 . 28 262 Alfin-like Transcription Factor Family AT5G05610 75.4 9.1e-105 376.7
Cec08g1020 . 8 252 Alfin-like Transcription Factor Family AT5G05610 66.5 1.8e-92 335.9
Cec11g0170 . 61 303 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Cec09g0082 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.9 9.7e-91 330.1
Cec10g0733 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Cec07g0476 . 1 117 Alfin-like Transcription Factor Family AT5G05610 79.5 1.4e-52 203.4
Cec07g0477 . 5 127 Alfin-like Transcription Factor Family AT5G05610 75.8 1.8e-52 203.0
Cec10g2211 . 65 262 Alfin-like Transcription Factor Family AT3G11200 76.2 1.8e-86 315.8
Cec08g1020 . 44 252 Alfin-like Transcription Factor Family AT3G11200 65.6 1.9e-75 279.3
Cec09g0082 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Cec11g0170 . 97 303 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Cec10g0733 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.0e-70 260.8
Cec07g0477 . 5 127 Alfin-like Transcription Factor Family AT3G11200 73.0 6.2e-50 194.5
Cec07g0476 . 43 117 Alfin-like Transcription Factor Family AT3G11200 92.0 7.1e-38 154.5
Cec10g0733 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cec11g0170 . 54 211 Alfin-like Transcription Factor Family AT2G02470 76.6 6.7e-66 247.7
Cec08g1020 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Cec09g0082 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.1e-63 238.8
Cec10g2211 . 22 157 Alfin-like Transcription Factor Family AT2G02470 71.7 2.7e-54 209.1
Cec07g0476 . 8 117 Alfin-like Transcription Factor Family AT2G02470 71.4 2.1e-43 172.9
Cec08g1020 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Cec11g0170 . 54 213 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Cec09g0082 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.1e-68 255.0
Cec10g0733 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.7e-67 250.4
Cec10g2211 . 29 188 Alfin-like Transcription Factor Family AT5G20510 58.6 6.0e-51 197.6
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81