Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0477 ATGATTCGTTGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACTGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTACCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG 387 45.48 MIRWKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNCNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGRP 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5122799 5125073 + CePI673135_07g004770.1 Cec07g0477 207256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0477 128 Pfam PHD-finger 75 121 IPR019787 -
Cec07g0477 128 ProSiteProfiles Zinc finger PHD-type profile. 72 124 IPR019787 -
Cec07g0477 128 SMART PHD_3 74 122 IPR001965 -
Cec07g0477 128 MobiDBLite consensus disorder prediction 24 52 - -
Cec07g0477 128 PANTHER CPG BINDING PROTEIN 5 127 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec07g0477 128 CDD PHD_AL_plant 74 124 IPR044104 -
Cec07g0477 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 123 IPR013083 -
Cec07g0477 128 ProSitePatterns Zinc finger PHD-type signature. 75 121 IPR019786 -
Cec07g0477 128 MobiDBLite consensus disorder prediction 36 50 - -
Cec07g0477 128 FunFam PHD finger alfin-like protein 67 123 - -
Cec07g0477 128 SUPERFAMILY FYVE/PHD zinc finger 63 126 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0477 Cec-Chr7:5122799 Cec09g0082 Cec-Chr9:715298 3.20E-40 dispersed
Cec07g0477 Cec-Chr7:5122799 Cec10g2211 Cec-Chr10:36517318 5.80E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29889 PF00628 PHD 2.40E-11 CL0390 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0477 K26274 - csv:101211934 255.373