Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec07g0569 | ATGGCTTTTTACTCACCATTTTCCTCCCTCTTCCTTCTTCCTTTCTTCTTCATCTCTTTTCCCTTCGCTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTAGTGACGCATCTGGCACCATGGGCGGAGCTTGTGGATATGGGAACTTGTATAGCCAAGGGTACGGCACAAACACGGTGGCGCTTAGTACAGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGTCTTCCTGGAACCATTAGGGTCACTGCCACCAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGCTGGTGCAACCCTCCACTCCAACACTTCGACATGGCTGAACCTGCCTTTCTTCAGATCGCACAGTACCGTGCTGGAATCGTCCCCGTCTCCTTTCGTAGAGTACCATGTATGAAAAAAGGTGGAGTGAGGTTCACAATCAATGGCCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATATCCACGCTGTGTCCATAAAGGGGTCTCGAACAGGATGGCAAGCCATGTCCAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTCAGCGATGGTCACACTCTCACTGCCTATAATCTCGTCCCTTCCAATTGGCAATTTGGCCAAACATTTGAAGGCCCTCAATTCTAA | 759 | 50.33 | MAFYSPFSSLFLLPFFFISFPFAFADYGGWQSGHATFYGGSDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDIHAVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7096549 | 7099567 | - | CePI673135_07g005690.1 | Cec07g0569 | 207348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec07g0569 | 252 | Gene3D | - | 160 | 252 | IPR036749 | - | |
| Cec07g0569 | 252 | PANTHER | EXPANSIN-A15 | 20 | 252 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | Pfam | Lytic transglycolase | 65 | 150 | IPR009009 | - | |
| Cec07g0569 | 252 | CDD | DPBB_EXPA_N | 29 | 155 | - | - | |
| Cec07g0569 | 252 | FunFam | Expansin | 21 | 156 | - | - | |
| Cec07g0569 | 252 | Gene3D | - | 21 | 156 | IPR036908 | - | |
| Cec07g0569 | 252 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 48 | 160 | IPR007112 | - | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 118 | 135 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 171 | 192 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 235 | 251 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 99 | 109 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 87 | 98 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 206 | 227 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 135 | 148 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 60 | 74 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin signature | 159 | 171 | IPR002963 | GO:0009664(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin/Lol pI family signature | 29 | 44 | IPR007118 | GO:0005576(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin/Lol pI family signature | 69 | 87 | IPR007118 | GO:0005576(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin/Lol pI family signature | 197 | 211 | IPR007118 | GO:0005576(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin/Lol pI family signature | 235 | 249 | IPR007118 | GO:0005576(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin/Lol pI family signature | 47 | 65 | IPR007118 | GO:0005576(InterPro) | |
| Cec07g0569 | 252 | PRINTS | Expansin/Lol pI family signature | 143 | 159 | IPR007118 | GO:0005576(InterPro) | |
| Cec07g0569 | 252 | SMART | dpbb_1 | 65 | 150 | IPR007112 | - | |
| Cec07g0569 | 252 | SUPERFAMILY | Barwin-like endoglucanases | 29 | 178 | IPR036908 | - | |
| Cec07g0569 | 252 | FunFam | Expansin | 160 | 252 | - | - | |
| Cec07g0569 | 252 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 170 | 249 | IPR007117 | - | |
| Cec07g0569 | 252 | SUPERFAMILY | PHL pollen allergen | 157 | 249 | IPR036749 | - | |
| Cec07g0569 | 252 | Pfam | Expansin C-terminal domain | 161 | 238 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g0339 | Cec-Chr2:3145323 | Cec07g0569 | Cec-Chr7:7096549 | 6.70E-74 | dispersed | |
| Cec02g2116 | Cec-Chr2:38725318 | Cec07g0569 | Cec-Chr7:7096549 | 4.10E-103 | dispersed | |
| Cec04g0951 | Cec-Chr4:29183375 | Cec07g0569 | Cec-Chr7:7096549 | 3.00E-106 | dispersed | |
| Cec07g0374 | Cec-Chr7:3761518 | Cec07g0569 | Cec-Chr7:7096549 | 4.20E-104 | dispersed | |
| Cec07g0569 | Cec-Chr7:7096549 | Cec11g0996 | Cec-Chr11:16789062 | 3.50E-107 | dispersed | |
| Cec10g0663 | Cec-Chr10:9253246 | Cec07g0569 | Cec-Chr7:7096549 | 2.60E-67 | transposed | |
| Cec11g0596 | Cec-Chr11:6554473 | Cec07g0569 | Cec-Chr7:7096549 | 2.20E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec07g0569 | - | - | - | 0.0 |