Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0579 ATGGAGGCTTCTTCTTCTTCTTCTTCTTCAATCAAATGGAGCTCTGAAAATGAAAATGGATCTCAACCTCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGTAAACTTGTTGAGAAGTTACTCAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTGTTAGTGCTTTGGAGTTCTTAGGTTTGTTGGATGAACATAATCAACACAGCAACTTAGAATGCTCCAATAGGTCAAAGGTGAACATGATCATCACAGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGATGATGAAGGAAGTTCCTGTGGTAGTTGTATCATCGGAAAACGTGCCCACTCGCATCAACAAGTGTTTGAAAGAAGGAGCAGAGATGTTCATGCTGAAACCTTTGAAACAATCTGATGTGGTGAAACTCAAGTGCCAGTTGATGAACTGA 471 39.28 MEASSSSSSSIKWSSENENGSQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSALEFLGLLDEHNQHSNLECSNRSKVNMIITDYCMPGMSGYELLKKIKRSSMMKEVPVVVVSSENVPTRINKCLKEGAEMFMLKPLKQSDVVKLKCQLMN 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7332711 7334738 + CePI673135_07g005790.1 Cec07g0579 207358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0579 156 Pfam Response regulator receiver domain 25 149 IPR001789 GO:0000160(InterPro)
Cec07g0579 156 Gene3D - 19 156 - -
Cec07g0579 156 SMART REC_2 23 151 IPR001789 GO:0000160(InterPro)
Cec07g0579 156 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 151 IPR045279 GO:0009736(InterPro)
Cec07g0579 156 ProSiteProfiles Response regulatory domain profile. 24 155 IPR001789 GO:0000160(InterPro)
Cec07g0579 156 MobiDBLite consensus disorder prediction 1 24 - -
Cec07g0579 156 SUPERFAMILY CheY-like 21 150 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0579 K14492 - - csv:101208898 248.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0579 Cec-Chr7:7332711 Cec10g1628 Cec-Chr10:30724162 8.60E-40 dispersed
Cec07g0579 Cec-Chr7:7332711 Cec06g1863 Cec-Chr6:31985770 2.50E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g176 . . . . . . . . Cmo04g00099 . . Cma04g00100 Car04g01121 . . . Cpe01g00082 . . . . . . . Cla07g00490 Cam07g0526 Cec07g0579 . Clacu07g0533 Cmu07g0570 Cre07g0902 . Cone5ag0136 . . . . Chy10g00305 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01015 Csa05g00905 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1802 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cec05g1819 . 1 442 Response Regulator Gene Family AT4G31920 50.2 5.7e-94 342.0
Cec11g0360 . 16 343 Response Regulator Gene Family AT4G31920 54.8 1.1e-81 301.2
Cec06g0481 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cec05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cec08g1802 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cec05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.3e-40 164.5
Cec05g1819 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.2e-40 163.7
Cec06g1400 . 16 390 Response Regulator Gene Family AT2G25180 55.6 4.7e-102 369.0
Cec11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.6 1.0e-85 314.7
Cec05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cec06g0481 . 31 288 Response Regulator Gene Family AT2G25180 57.4 7.5e-76 282.0
Cec08g1802 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.4e-68 256.5
Cec06g0481 . 92 325 Response Regulator Gene Family AT2G01760 51.4 4.3e-54 208.8
Cec06g1400 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cec08g1802 . 72 259 Response Regulator Gene Family AT2G01760 51.0 4.6e-48 188.7
Cec11g0360 . 82 280 Response Regulator Gene Family AT2G01760 50.7 4.3e-38 155.6
Cec08g1802 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.6e-62 235.3
Cec05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cec06g0481 . 30 255 Response Regulator Gene Family AT4G16110 66.2 1.1e-78 291.6
Cec05g1819 . 12 233 Response Regulator Gene Family AT4G16110 55.6 3.4e-61 233.4
Cec08g1802 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cec06g1400 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cec11g0360 . 21 269 Response Regulator Gene Family AT4G16110 50.2 1.2e-53 208.4
Cec06g1863 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.6e-53 206.1
Cec05g2725 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cec01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cec04g0555 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cec05g2913 . 4 170 Response Regulator Gene Family AT3G48100 53.9 7.8e-40 160.6
Cec10g1628 . 3 156 Response Regulator Gene Family AT3G48100 52.6 5.6e-38 154.5
Cec07g0579 . 24 155 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cec05g2725 . 1 201 Response Regulator Gene Family AT1G59940 60.0 4.0e-55 212.2
Cec06g1863 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.2e-47 185.3
Cec01g0759 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.8e-40 162.9
Cec05g2913 . 11 156 Response Regulator Gene Family AT1G59940 58.9 2.3e-39 159.8
Cec10g1628 . 8 154 Response Regulator Gene Family AT1G59940 57.1 3.0e-39 159.5
Cec04g0555 . 11 154 Response Regulator Gene Family AT1G59940 56.3 8.9e-39 157.9
Cec07g0579 . 19 154 Response Regulator Gene Family AT1G59940 60.3 4.4e-38 155.6
Cec05g2725 . 28 185 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Cec06g1863 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.6e-46 182.6
Cec01g0759 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.4e-39 160.2
Cec10g1628 . 10 162 Response Regulator Gene Family AT1G10470 55.6 3.0e-39 159.1
Cec04g0555 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.6e-38 156.0
Cec05g2913 . 11 178 Response Regulator Gene Family AT1G10470 51.8 3.3e-38 155.6
Cec07g0579 . 24 154 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cec06g1863 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.6e-53 206.1
Cec05g2725 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cec01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cec04g0555 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cec05g2913 . 4 170 Response Regulator Gene Family AT3G48100 53.9 7.8e-40 160.6
Cec10g1628 . 3 156 Response Regulator Gene Family AT3G48100 52.6 5.6e-38 154.5
Cec07g0579 . 24 155 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cec06g1863 . 28 166 Response Regulator Gene Family AT5G62920 74.8 9.9e-51 196.8
Cec05g2725 . 25 175 Response Regulator Gene Family AT5G62920 66.9 7.1e-49 190.7
Cec01g0759 . 11 151 Response Regulator Gene Family AT5G62920 60.3 3.5e-40 161.8
Cec04g0555 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.0e-39 160.2
Cec10g1628 . 10 156 Response Regulator Gene Family AT5G62920 55.1 1.9e-38 156.0
Cec05g2913 . 11 173 Response Regulator Gene Family AT5G62920 52.4 7.4e-38 154.1
Cec06g1863 . 29 182 Response Regulator Gene Family AT1G19050 70.7 1.7e-51 199.5
Cec05g2725 . 23 185 Response Regulator Gene Family AT1G19050 58.5 5.3e-45 177.9
Cec05g2913 . 8 161 Response Regulator Gene Family AT1G19050 53.9 9.7e-39 157.1
Cec04g0555 . 11 156 Response Regulator Gene Family AT1G19050 54.8 2.8e-38 155.6
Cec01g0759 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cec07g0579 . 24 155 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Cec10g1628 . 8 156 Response Regulator Gene Family AT1G19050 53.0 2.4e-37 152.5
Cec04g0555 . 8 264 Response Regulator Gene Family AT2G41310 53.1 2.9e-60 228.8
Cec10g1628 . 1 157 Response Regulator Gene Family AT2G41310 70.1 2.6e-53 205.7
Cec01g0759 . 1 153 Response Regulator Gene Family AT2G41310 64.9 3.9e-49 191.8
Cec05g2913 . 3 160 Response Regulator Gene Family AT2G41310 63.3 1.1e-48 190.3
Cec08g0604 . 7 158 Response Regulator Gene Family AT2G41310 57.8 2.7e-42 169.1
Cec05g2725 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cec06g1863 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cec07g0579 . 18 155 Response Regulator Gene Family AT2G41310 55.6 5.6e-40 161.4
Cec04g0555 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.7e-63 239.6
Cec10g1628 . 1 157 Response Regulator Gene Family AT3G57040 73.2 2.2e-55 212.6
Cec01g0759 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Cec05g2913 . 4 160 Response Regulator Gene Family AT3G57040 64.8 1.4e-49 193.4
Cec05g2725 . 25 158 Response Regulator Gene Family AT3G57040 59.4 1.9e-43 172.9
Cec08g0604 . 11 174 Response Regulator Gene Family AT3G57040 55.2 1.3e-42 170.2
Cec06g1863 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cec07g0579 . 21 155 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cec06g1863 . 26 188 Response Regulator Gene Family AT1G74890 70.3 1.8e-53 206.1
Cec05g2725 . 25 187 Response Regulator Gene Family AT1G74890 61.2 4.3e-47 184.9
Cec05g2913 . 5 161 Response Regulator Gene Family AT1G74890 56.1 6.7e-40 161.0
Cec04g0555 . 12 172 Response Regulator Gene Family AT1G74890 52.1 4.3e-39 158.3
Cec01g0759 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Cec10g1628 . 8 154 Response Regulator Gene Family AT1G74890 54.4 6.3e-38 154.5
Cec07g0579 . 24 151 Response Regulator Gene Family AT1G74890 60.2 5.3e-37 151.4
Cec07g0579 . 24 156 Response Regulator Gene Family AT2G40670 70.1 2.0e-47 185.7
Cec05g2725 . 26 159 Response Regulator Gene Family AT2G40670 56.9 3.1e-40 161.8
Cec10g1628 . 6 156 Response Regulator Gene Family AT2G40670 54.6 2.0e-39 159.1
Cec06g1863 . 32 163 Response Regulator Gene Family AT2G40670 60.0 2.9e-38 155.2
Cec04g0555 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.3e-37 150.6
Cec07g0579 . 6 156 Response Regulator Gene Family AT3G56380 66.4 6.5e-48 187.2
Cec05g2725 . 23 159 Response Regulator Gene Family AT3G56380 52.9 2.9e-40 161.8
Cec06g1863 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.0e-40 161.0
Cec10g1628 . 6 156 Response Regulator Gene Family AT3G56380 52.6 2.8e-38 155.2
Cec01g0759 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cec05g2913 . 3 151 Response Regulator Gene Family AT3G56380 54.7 8.9e-37 150.2
Cec08g1802 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cec05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cec06g0481 . 30 255 Response Regulator Gene Family AT4G16110 66.2 1.1e-78 291.6
Cec05g1819 . 12 233 Response Regulator Gene Family AT4G16110 55.6 3.4e-61 233.4
Cec08g1802 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cec06g1400 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cec11g0360 . 21 269 Response Regulator Gene Family AT4G16110 50.2 1.2e-53 208.4
Cec05g1819 . 1 442 Response Regulator Gene Family AT4G31920 50.2 5.7e-94 342.0
Cec11g0360 . 16 343 Response Regulator Gene Family AT4G31920 54.8 1.1e-81 301.2
Cec06g0481 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cec05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cec08g1802 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cec05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.3e-40 164.5
Cec05g1819 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.2e-40 163.7
Cec06g1400 . 16 390 Response Regulator Gene Family AT2G25180 55.6 4.7e-102 369.0
Cec11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.6 1.0e-85 314.7
Cec05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cec06g0481 . 31 288 Response Regulator Gene Family AT2G25180 57.4 7.5e-76 282.0
Cec08g1802 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.4e-68 256.5
Cec06g0481 . 92 325 Response Regulator Gene Family AT2G01760 51.4 4.3e-54 208.8
Cec06g1400 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cec08g1802 . 72 259 Response Regulator Gene Family AT2G01760 51.0 4.6e-48 188.7
Cec11g0360 . 82 280 Response Regulator Gene Family AT2G01760 50.7 4.3e-38 155.6
Cec08g1802 . 9 258 Response Regulator Gene Family AT5G58080 50.6 8.6e-62 235.3
Cec04g1013 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.3e-54 209.5
Cec01g0007 . 107 244 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
Cec04g1013 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.4e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013335 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29896 PF00072 Response_reg 1.10E-21 CL0304 Cec TR