Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0663 ATGGCTACGCTTCAGACATGGAGGAAAGCCTATGGCGCTCTCAAGGATTCTACCAAAGTCGGCCTTGCCCATGTCAACAGCGATTACGCGGATTTGGATGTCGCAATAGTCAAAGCTACTAACCACGTCGAGTGCCCGCCCAAGGAGAGACACCTCAGGAAAATTCTGATTGCTACATCTGCAATTAGACCTCGTGCTGATGTTGCTTATTGCATTCATGCCCTTGCTCGTCGCTTGTCCAAGACTCGGAATTGGACGGTAGCTTTGAAAACATTAATAGTCATACATAGGACCTTGAGGGAGGGCGATCCAACATTCAGGGAAGAACTTTTGAATTTTACACAAAGAGCTCGAATTCTTCAACTGTCTAATTTTAAGGATGATTCAAGCCCAATTGCTTGGGATTGCTCTGCATGGGTACGTACATATGCATTGTTTTTAGAGGAGCGTCTCGAATGTTTCAGGATACTTAAGTATGACATTGAATCTGAACGCCTGCCAAGACCTGCCCAAGGTCAGGATAAGAATGGAAGAGGACTTAGGAATAATAAGAATATCAAAGTTGAAGATCAAGGTTGGGTGGAATCTGAGATGTGCAATTTGGCTAAGTACCGCGGGTCGATTCTACATTCATGTACCAGAAGGAATAGCTCAACATGGGTGGGCAGAATTCTTGAAGATGCTAAAAGGAAGCCTCCACGAAATGGAAACCACAGAGAAAATCCCATTTTTGAGAAGGAACATCGGAAATATTCGTCCTCGTCACCAACATTACAGCCAAGTTTTGCTGAAGTAGTGTCAAAAAGAAACTGCCAGTTGAACTCCTCTGTCCGGGAACCCACAAATCAAAGCAAAAGGGATTCTGCAACCATAGAACAGAAGCAAAACTCCGGTCAAATCCCACTCGTTTTTGATGGTACTAAGCCGCCGAAGTCAGATGATCCGTCGGAGAAGAAGAACAAAGAAACCTGGTCCAGTGTGAACACTAGGGAGGGTAACGAAAAGGCAGAATCATTATGGAAAGAGAAGATTGAAGGTTGTAGTGTGAATGCAGGGGAGAAAAATGAAGAGTCCTTAGTGTTGAGGAAAGAAAATTTGGTCGGCTGCTCACTCTATGAATTAAATTCCCTCGTCGAGTCTGCTGGTATTCCCTGCGAAGAAAAAGAGGAGTTAATTGATGGTTGCTCTCCCTCCAACAAATTTAATTCGATCAATAGTTGCCTTCACCAAGGATCCATCTCCTTGAAACAGTTCATTGTGAAACCAAGGGAGGAGGTAGCCGACAAGCAATCAATGAAGGAACTTAATTCGGAAGCCCCCTCGGTTTCCATAAAACGCTTCGACTTCCTGTCAACTAACCTGAATATTAATCAGGAAGTTAATGCGCTCGTGGCTGCGGAAGAAAGACAGCCAGCCGACTCTGCCAACCAGCAGTCTTCACTGTTTCATAATCCACAGAAAGGGAAGAACCCCACTCCACCAATGACAACTCAGCTGACATTGCAAATCCCAGGCAACACTCTTAACAGGTCAGAATCTTCTCAGCTTAAAACTCTTCCCTTTACTCAGTCTAAAGTTAACATTCCTGATTCTAAAGTATCTTTTGTCCGAGGTATCCCCTGCCATAAACCTCAAATTAATCTGTACAACGTCCAAGATGAAGACGGCGACTCTATAATTAGTGTAAGCACGGAGGACTTGGAAGTTTCAGACCTAGATGAGGCATCAGAAGAGGCTGATCCAATTACAATCGATGAAGATGATCTGAAATTATTATTCCAATTAGAGGAGAAACCAATTCTTAACAAAAAAGAAGAGACAACTTTCAACCAGATCGATCAGAAGACCATCCCTCAGCACCTCCTGCCATTAATAGAAGATTGCGACCTGGTCTTCAGATATTAA 1905 43.67 MATLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSAIRPRADVAYCIHALARRLSKTRNWTVALKTLIVIHRTLREGDPTFREELLNFTQRARILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIESERLPRPAQGQDKNGRGLRNNKNIKVEDQGWVESEMCNLAKYRGSILHSCTRRNSSTWVGRILEDAKRKPPRNGNHRENPIFEKEHRKYSSSSPTLQPSFAEVVSKRNCQLNSSVREPTNQSKRDSATIEQKQNSGQIPLVFDGTKPPKSDDPSEKKNKETWSSVNTREGNEKAESLWKEKIEGCSVNAGEKNEESLVLRKENLVGCSLYELNSLVESAGIPCEEKEELIDGCSPSNKFNSINSCLHQGSISLKQFIVKPREEVADKQSMKELNSEAPSVSIKRFDFLSTNLNINQEVNALVAAEERQPADSANQQSSLFHNPQKGKNPTPPMTTQLTLQIPGNTLNRSESSQLKTLPFTQSKVNIPDSKVSFVRGIPCHKPQINLYNVQDEDGDSIISVSTEDLEVSDLDEASEEADPITIDEDDLKLLFQLEEKPILNKKEETTFNQIDQKTIPQHLLPLIEDCDLVFRY 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10887254 10895572 + CePI673135_07g006630.1 Cec07g0663 207442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0663 634 MobiDBLite consensus disorder prediction 471 498 - -
Cec07g0663 634 FunFam Clathrin assembly protein AP180 6 161 - -
Cec07g0663 634 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Cec07g0663 634 MobiDBLite consensus disorder prediction 227 259 - -
Cec07g0663 634 MobiDBLite consensus disorder prediction 310 325 - -
Cec07g0663 634 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Cec07g0663 634 MobiDBLite consensus disorder prediction 227 252 - -
Cec07g0663 634 MobiDBLite consensus disorder prediction 467 498 - -
Cec07g0663 634 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 178 IPR045192 GO:0000149(PANTHER)|GO:0005545(PANTHER)|GO:0005546(PANTHER)|GO:0005905(PANTHER)|GO:0006900(PANTHER)|GO:0030136(PANTHER)|GO:0032050(PANTHER)|GO:0048268(InterPro)|GO:0072583(PANTHER)|GO:0072583(InterPro)
Cec07g0663 634 CDD ANTH_N 32 154 IPR048050 -
Cec07g0663 634 Gene3D - 7 161 IPR008942 -
Cec07g0663 634 SMART enth_2 30 161 IPR013809 -
Cec07g0663 634 MobiDBLite consensus disorder prediction 274 302 - -
Cec07g0663 634 MobiDBLite consensus disorder prediction 274 334 - -
Cec07g0663 634 Pfam ANTH domain 31 178 IPR011417 GO:0005543(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0663 Cec-Chr7:10887254 Cec09g2398 Cec-Chr9:40802239 3.50E-132 dispersed
Cec07g0663 Cec-Chr7:10887254 Cec05g1861 Cec-Chr5:30680078 6.20E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003310 0 0 0 0 0 5 0 7 9 0 3 0 0 0 0 0 7 0 0 9 0 0 0 0 0 0 0 0 0 0 40