Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0695 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGGGGACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAACTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTTACTGTGAGGGATTCGCCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTTGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGGGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTCTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCTATTCGATTGAGGAGCGGAGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCCTTGGTCAATCTATTAACTTCTGATGACGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACGGACTCAGTGAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAGGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTCTTGTATAAGTAGGCTTGGCGCCGTGATTCCACTGACAGAGCTTGCCAAGAGTGGCACGGAGAGAGCTAAAAGGAAGGCTACTTCATTATTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 44.02 MAGIVAGDSDSAPALALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQLRPVDASSSSSSSCGAVTVRDSPQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSYSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12291413 12294572 - CePI673135_07g006950.1 Cec07g0695 207474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0695 657 Coils Coil 637 657 - -
Cec07g0695 657 FunFam RING-type E3 ubiquitin transferase 275 351 - -
Cec07g0695 657 Gene3D - 557 656 IPR011989 -
Cec07g0695 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Cec07g0695 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 Gene3D - 458 556 IPR011989 -
Cec07g0695 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Cec07g0695 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Cec07g0695 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec07g0695 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Cec07g0695 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 MobiDBLite consensus disorder prediction 251 275 - -
Cec07g0695 657 Gene3D - 360 457 IPR011989 -
Cec07g0695 657 SUPERFAMILY RING/U-box 274 351 - -
Cec07g0695 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Cec07g0695 657 Pfam U-box domain 278 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec07g0695 657 Coils Coil 153 173 - -
Cec07g0695 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Cec07g0695 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Cec07g0695 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Cec07g0695 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0695 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2133 Cec-Chr2:38871217 Cec07g0695 Cec-Chr7:12291413 5.80E-61 dispersed
Cec05g2340 Cec-Chr5:34660502 Cec07g0695 Cec-Chr7:12291413 8.40E-09 dispersed
Cec06g0956 Cec-Chr6:13336091 Cec07g0695 Cec-Chr7:12291413 1.80E-16 dispersed
Cec07g0695 Cec-Chr7:12291413 Cec11g0628 Cec-Chr11:6917208 4.70E-39 dispersed
Cec07g0695 Cec-Chr7:12291413 Cec01g0614 Cec-Chr1:6608904 1.10E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g412 . . . . . Bpe10g00993 Bma14g01592 . Cmo04g01075 . Cma04g00997 . Car04g00936 Car04g00053 . . . . . . . . . . Cla07g00605 Cam07g0630 Cec07g0695 Cco07g0680 Clacu07g0636 Cmu07g0660 Cre07g1008 Cone13ag0773 Cone19ag0775 . . Lsi04g01143 . . Cme10g01508 Blo06g01023 Blo11g00735 . . Bpe11g01609 . . . . . Cmo15g00984 . Cma15g00946 . . . . . . . . . . . Cla01g00596 Cam01g0624 Cec01g0615 Cco01g0639 Clacu01g0615 Cmu01g0588 Cre09g1916 Lsi09g00646 Csa05g01046 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40