Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0855 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCGTTGAGTGTGGGGGTGGGCGTCGGGGTGGGTCTTGGATTAGCCACCGGACAGAGCGTCAACAAATGGTCTGCCTCTAATTCTTCCTCAAACCTAATCACCGCCGATAAATTGGAACAAGAAATGCTTAAACACATTGTTAATGGCCGTGAAAGCAAAGTCACTTTTGATGAATTCCCTTATTATCTCAGTGAACAGACACGAGTTCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTCTCTAAGTTCACTCGAAACCTTTCTCCAGCAAGTCGAGCCATCTTACTCTCTGGACCTGCTGAACTCTACCAACAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAAGCCAAACTGTTGCTTTTGGATATTACTGACTTTTCCCTAAAGATTCAGAGCAAATATGGCACTTCAGTCAAGGAATCTGGTTTTAAAAGGTCTACTTCAGAGTCAACACTGGAGAGATTGTCTGGCTTATTTGGATCATTTTCAATCCTTCCACCCAGGGAAGAACAAAAAATAGGTTCATTGCGAAGGCAACGTAGTGGTGTGGAACTTGCATCCTGGGGAAAGGAAGGATCTTCCAATCTTCCAAAACTTCGAAGAAATGCCTCTGCTGCGGCTAACATTAATAACCTTGCTTCGCAATGCAATGTTGACAAATCAGCTCCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTATACAGTCTCTGTATAAGGTTCTTCTTTATGTGTCGAAAGCAAGTCCCATTGTTTTATATCTTCGTGACGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATATCTTGTTCCAGAAAATGCTACAAAAACTGTCTGGGTCAATTTTGATTCTTGGTTCACGTACTATTGATTCGAGCAATGATTACATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATCGAGATCAGGCCACCCGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGCAAATGATCTTGATTGTGACGATCTCGACTCAATCTGTGTTGCTGACACCTTGGTTCTCAGTAACTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAACAACAAGGATCCGGAATATAGAAACGGAAAACTGATCATTTCGAGCAAGAGTTTGTCCCATGGACTGAACATATTCCAGGCAGGAAAATCCACTGGCAAAAATACTGTACAGCTTGAAGCACAAGCTGAAGCTTCAAAGGACTTGGGAGCAGCAGTGAAATCCGAAGCAAAATCCGATACCACAGCTGCTGAAAACAGAAGTGAAACAGCACCTGCTGCTGCTGTGGCAAAAACTGATGGAGAGACTGCTGCTCCAGCTGCAAAAGCCCCTGAAGTTCCACCAGATAATGAGTTTGAGAAACGTATTAGGCCAGAGGTCATACCGGCGAATGAGATTGGTGTTACGTTTTCTGATATTGGTGCCATGGAGGAGATCAAAGATTCTCTTCAGGAACTCGTAATGCTTCCTCTTCGAAGGCCGGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCAGGAACTGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCCGGAGCAAGCTTCATTAATGTATCGATGTCTACCATAACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGGGCTTTATTCACATTGGCAGCCAAAGTCTCTCCCACCATCATATTTGTAGACGAGGTAGATAGTATGCTTGGCCAGCGAACAAGAGTTGGTGAGCATGAGGCGATGAGGAAGATAAAGAATGAGTTCATGACTCATTGGGATGGGCTCTTGACGAAGCCAGGGGAGCGTGTACTCGTTCTTGCAGCAACGAATAGGCCATTTGACCTCGATGAAGCCATCATACGGCGTTTTGAGAGAAGAATAATGGTGGGGTTACCAACAGCGGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTGGCTACAATGACAGAAGGATACAGTGGAAGTGATCTCAAGAACTTCTGCATGACGGCTGCGTATCGACCTGTTCGGGAACTAATACAGCAAGAAAGACTAAAGGATATGGAGAAAAAACGAAGAGCTGCCGAAGGACAGAATAAGGCAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCATTGAATATGGAGGATTTCAAACTAGCAAAGAATCAGGTTGCAGCCAGTTTTGCAGCAGAAGGAGCAATGATGAGTGAATTGAAGCAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTGACTTATTTCCTTGAAGCTCGCAGTTGCCATCCCATCGCTCCCCTTGCTATCGATGCAACAACAACTTCTAGATTTGAATCAAAGGCCCTCGTTTAG 2586 43.74 MEQKGLLLSALSVGVGVGVGLGLATGQSVNKWSASNSSSNLITADKLEQEMLKHIVNGRESKVTFDEFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESGFKRSTSESTLERLSGLFGSFSILPPREEQKIGSLRRQRSGVELASWGKEGSSNLPKLRRNASAAANINNLASQCNVDKSAPLKHMSSWAFEEKLLIQSLYKVLLYVSKASPIVLYLRDVDRFLSKSNRVYILFQKMLQKLSGSILILGSRTIDSSNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKMIKVQDNRNHIMEVLSANDLDCDDLDSICVADTLVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLIISSKSLSHGLNIFQAGKSTGKNTVQLEAQAEASKDLGAAVKSEAKSDTTAAENRSETAPAAAVAKTDGETAAPAAKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPTAENREMILTTLLGKEKVEEGLDMKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDMEKKRRAAEGQNKAGDGAGESKEERVITLRALNMEDFKLAKNQVAASFAAEGAMMSELKQWNELYGEGGSRKKQQLTYFLEARSCHPIAPLAIDATTTSRFESKALV 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20997626 21005686 + CePI673135_07g008550.1 Cec07g0855 207634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0855 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 349 IPR027417 -
Cec07g0855 861 MobiDBLite consensus disorder prediction 454 501 - -
Cec07g0855 861 Gene3D - 519 803 IPR027417 -
Cec07g0855 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 758 IPR027417 -
Cec07g0855 861 Gene3D - 692 796 - -
Cec07g0855 861 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 33 833 IPR051701 GO:0005741(PANTHER)
Cec07g0855 861 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 519 693 - -
Cec07g0855 861 MobiDBLite consensus disorder prediction 754 776 - -
Cec07g0855 861 Pfam AAA+ lid domain 714 756 IPR041569 -
Cec07g0855 861 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec07g0855 861 SMART AAA_5 556 693 IPR003593 GO:0016887(InterPro)
Cec07g0855 861 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0855 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1871 Cec-Chr4:37290531 Cec07g0855 Cec-Chr7:20997626 1.50E-28 dispersed
Cec07g0855 Cec-Chr7:20997626 Cec11g0727 Cec-Chr11:8204555 1.40E-54 dispersed
Cec03g0355 Cec-Chr3:3967429 Cec07g0855 Cec-Chr7:20997626 3.70E-161 transposed
Cec09g0457 Cec-Chr9:3911367 Cec07g0855 Cec-Chr7:20997626 4.80E-107 transposed
Cec09g0575 Cec-Chr9:4971606 Cec07g0855 Cec-Chr7:20997626 1.00E-137 transposed
Cec01g0083 Cec-Chr1:693326 Cec07g0855 Cec-Chr7:20997626 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75