Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0865 ATGGAAGATCAAAATAATTTGTACTCTTTTCTAAGGGAAGAAGATCAATTCTTTTCTTGTAGTGTTTATAATAATCCTCAACTTTCAAGTTCTTCTTCTTGTCCTTCAGTGGTTTATGATGAGTTTGAAGGGTTATTTGGAAGAAGCTGTTCATCCAATATTTTTCCAATTTTGCATCCAAACAATTCTACCTCCATTTCTGATCTTCTCAGGGACTTTAAGGAACCAGAAAAGCTTCATTACAAGAACCAAATCCAAACAACTAAACAGAAACAAAGCAAGAAAAGTCGACAGAATAGGGTAGTGAAAGAGGTGAAAGCAGATAGCGTATGTTCAGATTCATGGGGATGGAGAAAATATGGACAGAAGCCAATCAAAGGGTCGCCATATCCAAGAAGCTATTACAGATGCAGCTCCTCAAAAGGATGCTCTGCTCGAAAGCAAGTTGAACGGAGCCTCTCCGATCCAGATATCTTCGTTGTAACCTACACAGCCGAGCACAACCATGCCGAGCCTACTCGCCGCAACGCCCTCGCCGGGACCACTCGGAAAAAGTTCCCGGCTCTAGAGACCCCGAATTTCGACATGATTCTCTCACAAAATAATTCTACTTCTGTGGCTTCCATTGAAGAAGAACATCCAATGGAAGGTGTGGCAGAAGGGGAAGTTTTGATGGATATGCCATTTGGATTCTTTACTGGTTTGGAGGATTTGCTTTTTGGATGA 726 41.6 MEDQNNLYSFLREEDQFFSCSVYNNPQLSSSSSCPSVVYDEFEGLFGRSCSSNIFPILHPNNSTSISDLLRDFKEPEKLHYKNQIQTTKQKQSKKSRQNRVVKEVKADSVCSDSWGWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSLSDPDIFVVTYTAEHNHAEPTRRNALAGTTRKKFPALETPNFDMILSQNNSTSVASIEEEHPMEGVAEGEVLMDMPFGFFTGLEDLLFG 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21284517 21285904 - CePI673135_07g008650.1 Cec07g0865 207644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0865 241 SMART WRKY_cls 111 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec07g0865 241 Gene3D WRKY domain 93 173 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec07g0865 241 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec07g0865 241 ProSiteProfiles WRKY domain profile. 106 172 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec07g0865 241 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 71 196 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cec07g0865 241 Pfam WRKY DNA -binding domain 113 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0865 K13426 - - csv:101213208 333.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0152 Cec-Chr5:1266840 Cec07g0865 Cec-Chr7:21284517 6.20E-35 dispersed
Cec07g0865 Cec-Chr7:21284517 Cec10g1159 Cec-Chr10:25359492 1.30E-23 dispersed
Cec07g0864 Cec-Chr7:21187244 Cec07g0865 Cec-Chr7:21284517 1.70E-12 tandem
Cec01g0090 Cec-Chr1:744261 Cec07g0865 Cec-Chr7:21284517 5.80E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007717 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29906 PF03106 WRKY 9.70E-26 CL0274 Cec TF