Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0888 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGCAACAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAAGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATTCTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGATCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATCATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGCGTGGTGGTAGCAGGGGGGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTTAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCATCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCTGATGCCGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1152 43.58 MDDFGSSSRFHHHQYYNFESNSSSNNNNNNRRSRDFDDDEEQQQQQDQEMEECCNNNNNNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHHHNRHPVLDGSSYGGASAFYHLRSPATAPQIEAVPVVADGKRGGSRGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMLMPMPINNNNVSTMEFFEKGKSSMSSSFDFDT 383
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 21955307 21956458 - CePI673135_07g008880.1 Cec07g0888 207667
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0888 383 MobiDBLite consensus disorder prediction 15 30 - -
Cec07g0888 383 Gene3D - 69 184 IPR015300 -
Cec07g0888 383 MobiDBLite consensus disorder prediction 15 56 - -
Cec07g0888 383 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 FunFam B3 domain-containing protein 69 188 - -
Cec07g0888 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 312 IPR044800 GO:0003700(InterPro)
Cec07g0888 383 SMART B3_2 76 180 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 CDD B3_DNA 74 163 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 SUPERFAMILY DNA-binding pseudobarrel domain 73 178 IPR015300 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0239 Cec-Chr6:2554739 Cec07g0888 Cec-Chr7:21955307 9.90E-52 dispersed
Cec07g0888 Cec-Chr7:21955307 Cec10g1886 Cec-Chr10:33687955 1.00E-38 dispersed
Cec01g0127 Cec-Chr1:1163092 Cec07g0888 Cec-Chr7:21955307 3.50E-52 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29908 PF02362 B3 4.80E-27 CL0405 Cec TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0888 K09287 - csv:101220139 486.108