Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0888 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGCAACAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAAGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATTCTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGATCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATCATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGCGTGGTGGTAGCAGGGGGGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTTAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCATCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCTGATGCCGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1152 43.58 MDDFGSSSRFHHHQYYNFESNSSSNNNNNNRRSRDFDDDEEQQQQQDQEMEECCNNNNNNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHHHNRHPVLDGSSYGGASAFYHLRSPATAPQIEAVPVVADGKRGGSRGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMLMPMPINNNNVSTMEFFEKGKSSMSSSFDFDT 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21955307 21956458 - CePI673135_07g008880.1 Cec07g0888 207667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0888 383 MobiDBLite consensus disorder prediction 15 30 - -
Cec07g0888 383 Gene3D - 69 184 IPR015300 -
Cec07g0888 383 MobiDBLite consensus disorder prediction 15 56 - -
Cec07g0888 383 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 FunFam B3 domain-containing protein 69 188 - -
Cec07g0888 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 312 IPR044800 GO:0003700(InterPro)
Cec07g0888 383 SMART B3_2 76 180 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 CDD B3_DNA 74 163 IPR003340 GO:0003677(InterPro)
Cec07g0888 383 SUPERFAMILY DNA-binding pseudobarrel domain 73 178 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0888 K09287 - - csv:101220139 486.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0239 Cec-Chr6:2554739 Cec07g0888 Cec-Chr7:21955307 9.90E-52 dispersed
Cec07g0888 Cec-Chr7:21955307 Cec10g1886 Cec-Chr10:33687955 1.00E-38 dispersed
Cec01g0127 Cec-Chr1:1163092 Cec07g0888 Cec-Chr7:21955307 3.50E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1886 . 1 153 RAV Transcription Factor Family AT2G36080 62.7 5.6e-48 187.6
Cec06g0239 . 82 197 RAV Transcription Factor Family AT2G36080 68.9 3.2e-43 171.8
Cec01g0127 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 9.6e-40 160.2
Cec07g0888 . 68 179 RAV Transcription Factor Family AT2G36080 68.4 4.8e-39 157.9
Cec05g2525 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.0e-38 154.8
Cec01g0127 . 29 144 RAV Transcription Factor Family AT2G46870 88.0 9.1e-57 217.6
Cec07g0888 . 71 317 RAV Transcription Factor Family AT2G46870 52.3 2.7e-53 206.1
Cec06g0239 . 77 327 RAV Transcription Factor Family AT2G46870 52.3 2.3e-52 203.0
Cec05g2525 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cec10g1886 . 33 149 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Cec10g1886 . 27 160 RAV Transcription Factor Family AT3G11580 63.3 5.0e-44 174.9
Cec06g0239 . 84 204 RAV Transcription Factor Family AT3G11580 59.1 4.4e-40 161.8
Cec01g0127 . 29 140 RAV Transcription Factor Family AT3G11580 61.0 1.8e-38 156.4
Cec07g0888 . 71 179 RAV Transcription Factor Family AT3G11580 63.1 5.4e-38 154.8
Cec01g0127 . 28 144 RAV Transcription Factor Family AT3G61970 80.0 6.5e-52 201.4
Cec06g0239 . 85 205 RAV Transcription Factor Family AT3G61970 75.8 4.3e-48 188.7
Cec05g2525 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cec10g1886 . 38 149 RAV Transcription Factor Family AT3G61970 67.0 1.7e-39 160.2
Cec01g0127 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 5.2e-42 168.7
Cec06g0239 . 58 197 RAV Transcription Factor Family AT4G01500 59.1 7.5e-41 164.9
Cec07g0888 . 72 179 RAV Transcription Factor Family AT4G01500 67.2 2.7e-38 156.4
Cec10g1886 . 38 237 RAV Transcription Factor Family AT5G06250 52.6 2.1e-49 193.0
Cec06g0239 . 87 197 RAV Transcription Factor Family AT5G06250 64.5 2.3e-40 162.9
Cec01g0127 . 30 138 RAV Transcription Factor Family AT5G06250 65.5 8.7e-40 161.0
Cec05g2525 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Cec03g1432 . 40 330 RAV Transcription Factor Family AT1G50680 52.1 1.4e-79 293.5
Cec03g1432 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 2.4e-77 286.2
Cec05g2525 . 1 347 RAV Transcription Factor Family AT1G13260 62.0 3.1e-106 382.1
Cec03g0984 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Cec06g0239 . 83 197 RAV Transcription Factor Family AT1G13260 67.2 4.7e-38 155.6
Cec01g0127 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 6.1e-38 155.2
Cec10g1886 . 38 150 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cec05g2525 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 1.6e-99 359.8
Cec03g0984 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.6e-89 323.9
Cec10g1886 . 38 150 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cec05g2525 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 1.5e-111 399.8
Cec03g0984 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cec10g1886 . 38 166 RAV Transcription Factor Family AT1G68840 64.6 5.7e-39 158.7
Cec01g0127 . 30 138 RAV Transcription Factor Family AT1G68840 71.2 7.4e-39 158.3
Cec06g0239 . 87 204 RAV Transcription Factor Family AT1G68840 64.2 3.7e-38 156.0
Cec05g2525 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 1.6e-99 359.8
Cec03g0984 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.6e-89 323.9
Cec10g1886 . 38 150 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cec03g1432 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 2.4e-77 286.2
Cec10g1886 . 27 160 RAV Transcription Factor Family AT3G11580 63.3 5.0e-44 174.9
Cec06g0239 . 84 204 RAV Transcription Factor Family AT3G11580 59.1 4.4e-40 161.8
Cec01g0127 . 29 140 RAV Transcription Factor Family AT3G11580 61.0 1.8e-38 156.4
Cec07g0888 . 71 179 RAV Transcription Factor Family AT3G11580 63.1 5.4e-38 154.8
Cec01g0127 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 5.2e-42 168.7
Cec06g0239 . 58 197 RAV Transcription Factor Family AT4G01500 59.1 7.5e-41 164.9
Cec07g0888 . 72 179 RAV Transcription Factor Family AT4G01500 67.2 2.7e-38 156.4
Cec10g1886 . 1 153 RAV Transcription Factor Family AT2G36080 62.7 5.6e-48 187.6
Cec06g0239 . 82 197 RAV Transcription Factor Family AT2G36080 68.9 3.2e-43 171.8
Cec01g0127 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 9.6e-40 160.2
Cec07g0888 . 68 179 RAV Transcription Factor Family AT2G36080 68.4 4.8e-39 157.9
Cec05g2525 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.0e-38 154.8
Cec10g1886 . 38 237 RAV Transcription Factor Family AT5G06250 52.6 2.1e-49 193.0
Cec06g0239 . 87 197 RAV Transcription Factor Family AT5G06250 64.5 2.3e-40 162.9
Cec01g0127 . 30 138 RAV Transcription Factor Family AT5G06250 65.5 8.7e-40 161.0
Cec05g2525 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 6.9e-37 151.4
Cec01g0127 . 29 144 RAV Transcription Factor Family AT2G46870 88.0 9.1e-57 217.6
Cec07g0888 . 71 317 RAV Transcription Factor Family AT2G46870 52.3 2.7e-53 206.1
Cec06g0239 . 77 327 RAV Transcription Factor Family AT2G46870 52.3 2.3e-52 203.0
Cec05g2525 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 2.9e-39 159.5
Cec10g1886 . 33 149 RAV Transcription Factor Family AT2G46870 65.8 4.2e-38 155.6
Cec03g1432 . 40 330 RAV Transcription Factor Family AT1G50680 52.1 1.4e-79 293.5
Cec01g0127 . 28 144 RAV Transcription Factor Family AT3G61970 80.0 6.5e-52 201.4
Cec06g0239 . 85 205 RAV Transcription Factor Family AT3G61970 75.8 4.3e-48 188.7
Cec05g2525 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cec10g1886 . 38 149 RAV Transcription Factor Family AT3G61970 67.0 1.7e-39 160.2
Cec05g2525 . 1 347 RAV Transcription Factor Family AT1G13260 62.0 3.1e-106 382.1
Cec03g0984 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.1e-92 337.0
Cec06g0239 . 83 197 RAV Transcription Factor Family AT1G13260 67.2 4.7e-38 155.6
Cec01g0127 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 6.1e-38 155.2
Cec10g1886 . 38 150 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cec05g2525 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 1.5e-111 399.8
Cec03g0984 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cec10g1886 . 38 166 RAV Transcription Factor Family AT1G68840 64.6 5.7e-39 158.7
Cec01g0127 . 30 138 RAV Transcription Factor Family AT1G68840 71.2 7.4e-39 158.3
Cec06g0239 . 87 204 RAV Transcription Factor Family AT1G68840 64.2 3.7e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29908 PF02362 B3 4.80E-27 CL0405 Cec TF