Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec07g0888 | ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGCAACAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAAGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAACAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATTCTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGATCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATCATCATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGCGTGGTGGTAGCAGGGGGGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTTAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCATCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCTGATGCCGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA | 1152 | 43.58 | MDDFGSSSRFHHHQYYNFESNSSSNNNNNNRRSRDFDDDEEQQQQQDQEMEECCNNNNNNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHHHHNRHPVLDGSSYGGASAFYHLRSPATAPQIEAVPVVADGKRGGSRGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMLMPMPINNNNVSTMEFFEKGKSSMSSSFDFDT | 383 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 21955307 | 21956458 | - | CePI673135_07g008880.1 | Cec07g0888 | 207667 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec07g0888 | 383 | MobiDBLite | consensus disorder prediction | 15 | 30 | - | - | |
| Cec07g0888 | 383 | Gene3D | - | 69 | 184 | IPR015300 | - | |
| Cec07g0888 | 383 | MobiDBLite | consensus disorder prediction | 15 | 56 | - | - | |
| Cec07g0888 | 383 | ProSiteProfiles | B3 DNA-binding domain profile. | 76 | 180 | IPR003340 | GO:0003677(InterPro) | |
| Cec07g0888 | 383 | Pfam | B3 DNA binding domain | 76 | 179 | IPR003340 | GO:0003677(InterPro) | |
| Cec07g0888 | 383 | FunFam | B3 domain-containing protein | 69 | 188 | - | - | |
| Cec07g0888 | 383 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 25 | 312 | IPR044800 | GO:0003700(InterPro) | |
| Cec07g0888 | 383 | SMART | B3_2 | 76 | 180 | IPR003340 | GO:0003677(InterPro) | |
| Cec07g0888 | 383 | CDD | B3_DNA | 74 | 163 | IPR003340 | GO:0003677(InterPro) | |
| Cec07g0888 | 383 | SUPERFAMILY | DNA-binding pseudobarrel domain | 73 | 178 | IPR015300 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec06g0239 | Cec-Chr6:2554739 | Cec07g0888 | Cec-Chr7:21955307 | 9.90E-52 | dispersed | |
| Cec07g0888 | Cec-Chr7:21955307 | Cec10g1886 | Cec-Chr10:33687955 | 1.00E-38 | dispersed | |
| Cec01g0127 | Cec-Chr1:1163092 | Cec07g0888 | Cec-Chr7:21955307 | 3.50E-52 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29908 | PF02362 | B3 | 4.80E-27 | CL0405 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec07g0888 | K09287 | - | csv:101220139 | 486.108 |