Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0963 ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCAGAAGAGGTTCCAATTATCATCTTCCTACTACTACTACTAGTATCACCACCAGCGGCGGCGAAATAATTCATCCCAACGAGGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACGTGGGAAGAACAACAGCAACCGCAGGAACAAGGGGGAGAAGGATTTGTTTACTCGGGCGATGAATCGCCGGCTAGATCGTCGTTGGTGATGGTGAGATCGGGAAGAGGCGGCGGTGGAGGGCATGTAACGAGCTGCCAAGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCCAACTCCGTTGCCTCGCCTCTAACCCCAAACGCCCTAAAGACAACCCCGCTGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTAAACTCTGCGGCGGTGTTTCGGTGCGTTCGAATGACAACGTTGGACGAAACCAACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACAACTACAACAACAGCCACCCACCTCCGCCTCCCCTGACGCCTCCGCCCTCCTCATCACCACCGCTGAATCCGCCGCATTGCTCGATCCACCTCCGCCGTACCCCACTCCTCTTTCCACCTACATCGCCACCGGTACGCAATTTTTTTTTCCCCCAACATCTTAA 819 52.14 MAGFFPLGGAGSSRRGSNYHLPTTTTSITTSGGEIIHPNEGLFWYKNYERLETWEEQQQPQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRQLRCLASNPKRPKDNPAASSGLEMGNFPVEVNSAAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQLQQQPPTSASPDASALLITTAESAALLDPPPPYPTPLSTYIATGTQFFFPPTS 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23622224 23623149 - CePI673135_07g009630.1 Cec07g0963 207742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0963 272 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 266 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cec07g0963 272 NCBIfam LRP1 C-terminal domain 169 216 IPR006511 -
Cec07g0963 272 MobiDBLite consensus disorder prediction 16 34 - -
Cec07g0963 272 NCBIfam putative zinc finger domain, LRP1 type 97 139 IPR006510 -
Cec07g0963 272 MobiDBLite consensus disorder prediction 55 74 - -
Cec07g0963 272 MobiDBLite consensus disorder prediction 1 34 - -
Cec07g0963 272 Pfam Domain of unknown function (DUF702) 96 217 - -
Cec07g0963 272 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2046 Cec-Chr5:32372190 Cec07g0963 Cec-Chr7:23622224 3.90E-44 dispersed
Cec05g2916 Cec-Chr5:39310674 Cec07g0963 Cec-Chr7:23622224 3.80E-28 dispersed
Cec07g0963 Cec-Chr7:23622224 Cec09g1445 Cec-Chr9:21478132 3.20E-42 dispersed
Cec04g1699 Cec-Chr4:36110252 Cec07g0963 Cec-Chr7:23622224 1.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29914 PF05142 DUF702 7.30E-51 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0963 K27807 - csv:101216097 373.244