Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec07g0983 | ATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATCTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAAGAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCTGTCGTCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTTACAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCAATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA | 651 | 46.39 | MNHQEAEEHQAVQISQLYTELYIQMVPQQGNLGESKPRRRRKKKRGSEAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERVTMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 24158517 | 24161267 | + | CePI673135_07g009830.1 | Cec07g0983 | 207762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec07g0983 | 216 | PRINTS | Lambda-repressor HTH signature | 82 | 91 | IPR000047 | GO:0003677(InterPro) | |
Cec07g0983 | 216 | PRINTS | Lambda-repressor HTH signature | 91 | 107 | IPR000047 | GO:0003677(InterPro) | |
Cec07g0983 | 216 | ProSitePatterns | 'Homeobox' domain signature. | 86 | 109 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cec07g0983 | 216 | FunFam | homeobox-leucine zipper protein ATHB-40 | 50 | 119 | - | - | |
Cec07g0983 | 216 | CDD | homeodomain | 56 | 112 | IPR001356 | GO:0003677(InterPro) | |
Cec07g0983 | 216 | MobiDBLite | consensus disorder prediction | 162 | 177 | - | - | |
Cec07g0983 | 216 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 39 | 166 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Cec07g0983 | 216 | MobiDBLite | consensus disorder prediction | 150 | 177 | - | - | |
Cec07g0983 | 216 | MobiDBLite | consensus disorder prediction | 28 | 60 | - | - | |
Cec07g0983 | 216 | SMART | HOX_1 | 54 | 115 | IPR001356 | GO:0003677(InterPro) | |
Cec07g0983 | 216 | SUPERFAMILY | Homeodomain-like | 56 | 119 | IPR009057 | - | |
Cec07g0983 | 216 | Gene3D | - | 47 | 119 | - | - | |
Cec07g0983 | 216 | Coils | Coil | 103 | 130 | - | - | |
Cec07g0983 | 216 | ProSiteProfiles | 'Homeobox' domain profile. | 51 | 111 | IPR001356 | GO:0003677(InterPro) | |
Cec07g0983 | 216 | Coils | Coil | 134 | 158 | - | - | |
Cec07g0983 | 216 | Pfam | Homeodomain | 57 | 110 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1629 | Cec-Chr4:35616947 | Cec07g0983 | Cec-Chr7:24158517 | 1.60E-39 | dispersed | |
Cec07g0983 | Cec-Chr7:24158517 | Cec10g1968 | Cec-Chr10:34472096 | 4.00E-19 | dispersed | |
Cec07g0983 | Cec-Chr7:24158517 | Cec01g1530 | Cec-Chr1:29892233 | 8.00E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29917 | PF00046 | Homeodomain | 4.70E-17 | CL0123 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec07g0983 | K09338 | - | csv:101221080 | 315.079 |