Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0983 ATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATCTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAAGAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCTGTCGTCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTTACAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCAATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 651 46.39 MNHQEAEEHQAVQISQLYTELYIQMVPQQGNLGESKPRRRRKKKRGSEAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERVTMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24158517 24161267 + CePI673135_07g009830.1 Cec07g0983 207762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0983 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677(InterPro)
Cec07g0983 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677(InterPro)
Cec07g0983 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec07g0983 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Cec07g0983 216 CDD homeodomain 56 112 IPR001356 GO:0003677(InterPro)
Cec07g0983 216 MobiDBLite consensus disorder prediction 162 177 - -
Cec07g0983 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 166 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec07g0983 216 MobiDBLite consensus disorder prediction 150 177 - -
Cec07g0983 216 MobiDBLite consensus disorder prediction 28 60 - -
Cec07g0983 216 SMART HOX_1 54 115 IPR001356 GO:0003677(InterPro)
Cec07g0983 216 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cec07g0983 216 Gene3D - 47 119 - -
Cec07g0983 216 Coils Coil 103 130 - -
Cec07g0983 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677(InterPro)
Cec07g0983 216 Coils Coil 134 158 - -
Cec07g0983 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1629 Cec-Chr4:35616947 Cec07g0983 Cec-Chr7:24158517 1.60E-39 dispersed
Cec07g0983 Cec-Chr7:24158517 Cec10g1968 Cec-Chr10:34472096 4.00E-19 dispersed
Cec07g0983 Cec-Chr7:24158517 Cec01g1530 Cec-Chr1:29892233 8.00E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29917 PF00046 Homeodomain 4.70E-17 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0983 K09338 - csv:101221080 315.079