Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g0994 ATGCCATCGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCTGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGAACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCTGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAAAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAAGCTGCTGGAAGTTTGTCTCCGGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCATGTTCAGCCGTCGGGTAGTTCGTCTCCGCCGCCTTCTGCCCCTCCTCTTTCCGCCGCGACCGGTGCCGCGCCAATAGCTCCTCCTCCATCCACTGACGCGATGTCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGCACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCGCTGTGCCTATCGACCGACACCGAATCGTCACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCCGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1209 53.6 MPSDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEAAGSLSPAAAENPNLESDPHVQPSGSSSPPPSAPPLSAATGAAPIAPPPSTDAMSSIASIENKASPENPPPQLGEAPGRTTLTGNSGSSSNASVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGSL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24312143 24315060 - CePI673135_07g009940.1 Cec07g0994 207773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g0994 402 Gene3D Classic Zinc Finger 130 193 - -
Cec07g0994 402 MobiDBLite consensus disorder prediction 1 26 - -
Cec07g0994 402 Gene3D Classic Zinc Finger 41 108 - -
Cec07g0994 402 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 197 - -
Cec07g0994 402 MobiDBLite consensus disorder prediction 196 279 - -
Cec07g0994 402 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Cec07g0994 402 FunFam protein indeterminate-domain 12-like 40 108 - -
Cec07g0994 402 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Cec07g0994 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cec07g0994 402 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cec07g0994 402 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cec07g0994 402 SMART c2h2final6 61 83 IPR013087 -
Cec07g0994 402 SMART c2h2final6 137 157 IPR013087 -
Cec07g0994 402 MobiDBLite consensus disorder prediction 1 45 - -
Cec07g0994 402 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cec07g0994 402 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cec07g0994 402 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 391 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec07g0994 402 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1826 Cec-Chr2:36101299 Cec07g0994 Cec-Chr7:24312143 1.70E-26 dispersed
Cec07g0994 Cec-Chr7:24312143 Cec08g1569 Cec-Chr8:27281530 4.00E-89 dispersed
Cec07g0994 Cec-Chr7:24312143 Cec04g1633 Cec-Chr4:35643273 2.00E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29920 PF00096 zf-C2H2 0.0039 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g0994 K25869 - csv:101215476 606.29