Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1022 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCAAACGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTGGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATAGCGGCTCATCTTCAACAGACCTCTGGTTGGTGA 675 47.41 MSGHKRNFTTTAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSLGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAIAAHLQQTSGW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24883369 24884043 - CePI673135_07g010220.1 Cec07g1022 207801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1022 224 FunFam Nuclear transcription factor Y subunit B-3 25 148 - -
Cec07g1022 224 MobiDBLite consensus disorder prediction 126 145 - -
Cec07g1022 224 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec07g1022 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 170 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cec07g1022 224 Gene3D Histone, subunit A 23 156 IPR009072 GO:0046982(InterPro)
Cec07g1022 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Cec07g1022 224 MobiDBLite consensus disorder prediction 1 32 - -
Cec07g1022 224 SUPERFAMILY Histone-fold 33 135 IPR009072 GO:0046982(InterPro)
Cec07g1022 224 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Cec07g1022 224 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Cec07g1022 224 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Cec07g1022 224 Coils Coil 112 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1022 K08065 - - csv:101214273 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0951 Cec-Chr2:13010460 Cec07g1022 Cec-Chr7:24883369 1.60E-46 dispersed
Cec07g1022 Cec-Chr7:24883369 Cec10g0423 Cec-Chr10:5109684 4.50E-42 dispersed
Cec07g1022 Cec-Chr7:24883369 Cec02g1461 Cec-Chr2:32002614 3.30E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0441 . 12 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.6 2.0e-48 189.5
Cec02g0951 . 6 131 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.3 1.9e-38 156.4
Cec10g0423 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.0e-37 151.4
Cec10g0441 . 8 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cec07g1022 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cec02g0951 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cec10g0423 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.4 3.9e-51 198.0
Cec07g1022 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Cec02g1461 . 406 524 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Cec09g0592 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cec02g1461 . 393 509 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cec02g0951 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cec10g0423 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 9.1e-42 166.8
Cec07g1022 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cec09g0592 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cec09g0592 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cec10g0423 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cec02g0951 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cec07g1022 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cec02g1461 . 399 537 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.8 6.8e-54 207.2
Cec10g2065 . 37 200 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.3 7.3e-48 187.2
Cec02g0951 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cec07g1022 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cec10g0423 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.6e-41 164.1
Cec09g0592 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Cec07g1022 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cec02g0951 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cec10g0423 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cec02g1461 . 419 513 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cec09g0592 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cec02g0951 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Cec10g0423 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 5.0e-50 194.5
Cec07g1022 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.3e-45 177.2
Cec02g1461 . 419 529 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Cec09g0592 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cec02g1461 . 404 526 CCAAT-HAP3 Transcription Factor Family AT3G53340 82.4 7.0e-54 207.2
Cec10g2065 . 37 200 CCAAT-HAP3 Transcription Factor Family AT3G53340 60.9 1.2e-45 179.9
Cec02g0951 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cec10g0423 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cec07g1022 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cec09g0592 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29924 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cec TF