Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec07g1034 | ATGAGAAGAAATCACTACAACGGTGGTAGACGCCAAATCGAGGATGATGATGGTGAATTGAGGAGGAGGAGGAGGATGACGGATGGCTCTCTCCTCTTGTCTGCAGCCAGGGAAGAAAATGAAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCGTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAATGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCATTGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACGTTGGGGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTACCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGATGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA | 1089 | 42.24 | MRRNHYNGGRRQIEDDDGELRRRRRMTDGSLLLSAAREENEVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSIVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLGRITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIDGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 25096581 | 25106260 | + | CePI673135_07g010340.1 | Cec07g1034 | 207813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec07g1034 | 362 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 46 | 78 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec07g1034 | 362 | PRINTS | MADS domain signature | 44 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec07g1034 | 362 | PRINTS | MADS domain signature | 59 | 80 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec07g1034 | 362 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cec07g1034 | 362 | Gene3D | - | 43 | 110 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec07g1034 | 362 | MobiDBLite | consensus disorder prediction | 331 | 362 | - | - | |
Cec07g1034 | 362 | SUPERFAMILY | SRF-like | 44 | 106 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec07g1034 | 362 | ProSiteProfiles | MADS-box domain profile. | 22 | 82 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec07g1034 | 362 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 41 | 248 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec07g1034 | 362 | Coils | Coil | 136 | 156 | - | - | |
Cec07g1034 | 362 | SMART | madsneu2 | 8 | 81 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec07g1034 | Cec-Chr7:25096581 | Cec08g0211 | Cec-Chr8:3858851 | 1.10E-10 | dispersed | |
Cec07g1034 | Cec-Chr7:25096581 | Cec01g1760 | Cec-Chr1:32147733 | 6.50E-14 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29928 | PF00319 | SRF-TF | 2.20E-14 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec07g1034 | - | - | - | 0.0 |