Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1034 ATGAGAAGAAATCACTACAACGGTGGTAGACGCCAAATCGAGGATGATGATGGTGAATTGAGGAGGAGGAGGAGGATGACGGATGGCTCTCTCCTCTTGTCTGCAGCCAGGGAAGAAAATGAAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCGTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAATGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCATTGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACGTTGGGGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTACCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGATGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1089 42.24 MRRNHYNGGRRQIEDDDGELRRRRRMTDGSLLLSAAREENEVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSIVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLGRITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIDGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25096581 25106260 + CePI673135_07g010340.1 Cec07g1034 207813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1034 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 MobiDBLite consensus disorder prediction 1 20 - -
Cec07g1034 362 Gene3D - 43 110 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 MobiDBLite consensus disorder prediction 331 362 - -
Cec07g1034 362 SUPERFAMILY SRF-like 44 106 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 248 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec07g1034 362 Coils Coil 136 156 - -
Cec07g1034 362 SMART madsneu2 8 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1034 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1034 Cec-Chr7:25096581 Cec08g0211 Cec-Chr8:3858851 1.10E-10 dispersed
Cec07g1034 Cec-Chr7:25096581 Cec01g1760 Cec-Chr1:32147733 6.50E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29928 PF00319 SRF-TF 2.20E-14 No_clan Cec TF