Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1034 ATGAGAAGAAATCACTACAACGGTGGTAGACGCCAAATCGAGGATGATGATGGTGAATTGAGGAGGAGGAGGAGGATGACGGATGGCTCTCTCCTCTTGTCTGCAGCCAGGGAAGAAAATGAAGTAGAAAAATTCAGAAATGGACTCATCAAAAAGGCGTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAATGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCATTGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACGTTGGGGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTACTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTACCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGATGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1089 42.24 MRRNHYNGGRRQIEDDDGELRRRRRMTDGSLLLSAAREENEVEKFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSIVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLGRITQRKKDLLSTHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNINVGSCNIGGCDIDGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25096581 25106260 + CePI673135_07g010340.1 Cec07g1034 207813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1034 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 MobiDBLite consensus disorder prediction 1 20 - -
Cec07g1034 362 Gene3D - 43 110 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 MobiDBLite consensus disorder prediction 331 362 - -
Cec07g1034 362 SUPERFAMILY SRF-like 44 106 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1034 362 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 248 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec07g1034 362 Coils Coil 136 156 - -
Cec07g1034 362 SMART madsneu2 8 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1034 Cec-Chr7:25096581 Cec08g0211 Cec-Chr8:3858851 1.10E-10 dispersed
Cec07g1034 Cec-Chr7:25096581 Cec01g1760 Cec-Chr1:32147733 6.50E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29928 PF00319 SRF-TF 2.20E-14 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1034 - - - 0.0