Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1054 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAAGAACAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGGGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCTGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGGGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACAGGGTCCCGCCGGTGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAATTAACCAAAAAAAAACTCAAAATCACACCCGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACACGAGAAAAACAGAGGCGAACAGGGCACGGATGGAATTATGGAGAAACGAAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGACACTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGTGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCGGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGTGCCCAACAAGATACCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1392 50.07 MMVEFHGEIRDPNDGEDQEHEEQEEEISYDDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESGLDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTKKKLKITPDVEEEEEEEEEEHEKNRGEQGTDGIMEKRKCIFEEEAVADSTLYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLGAQQDTTSIWDLRYEWAEE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25606303 25607694 + CePI673135_07g010540.1 Cec07g1054 207833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1054 463 MobiDBLite consensus disorder prediction 281 305 - -
Cec07g1054 463 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Cec07g1054 463 MobiDBLite consensus disorder prediction 44 67 - -
Cec07g1054 463 MobiDBLite consensus disorder prediction 393 414 - -
Cec07g1054 463 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cec07g1054 463 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 392 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Cec07g1054 463 MobiDBLite consensus disorder prediction 1 16 - -
Cec07g1054 463 FunFam Ethylene insensitive 3-like 1 142 279 - -
Cec07g1054 463 Coils Coil 29 49 - -
Cec07g1054 463 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cec07g1054 463 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cec07g1054 463 MobiDBLite consensus disorder prediction 1 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1054 K14514 - - csv:116406095 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1054 Cec-Chr7:25606303 Cec08g0891 Cec-Chr8:20729971 1.10E-85 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec03g1468 . 2 626 EIL Transcription Factor Family AT2G27050 58.4 7.6e-190 660.6
Cec08g0891 . 8 495 EIL Transcription Factor Family AT2G27050 62.6 6.9e-167 584.3
Cec03g1399 . 40 328 EIL Transcription Factor Family AT2G27050 60.9 3.5e-94 342.8
Cec03g1399 . 18 580 EIL Transcription Factor Family AT1G73730 54.1 1.1e-145 513.8
Cec03g1468 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.2e-105 378.3
Cec08g0891 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 5.1e-103 372.1
Cec07g1054 . 25 273 EIL Transcription Factor Family AT1G73730 55.5 1.1e-73 274.6
Cec03g1468 . 3 626 EIL Transcription Factor Family AT3G20770 62.4 1.9e-210 729.2
Cec08g0891 . 7 493 EIL Transcription Factor Family AT3G20770 63.5 1.1e-170 597.0
Cec03g1399 . 10 294 EIL Transcription Factor Family AT3G20770 62.7 2.8e-97 353.2
Cec07g1054 . 19 366 EIL Transcription Factor Family AT5G65100 50.3 8.5e-98 354.8
Cec03g1399 . 40 290 EIL Transcription Factor Family AT5G65100 53.7 8.9e-71 265.0
Cec07g1054 . 25 366 EIL Transcription Factor Family AT5G10120 54.7 3.2e-98 355.9
Cec03g1399 . 40 292 EIL Transcription Factor Family AT5G10120 54.8 9.5e-74 274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29929 PF04873 EIN3 3.00E-110 No_clan Cec TF