Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1153 ATGAGCTGCTCCTGCGATAAGGAACGCAAGTTTGCTGATGGTAGGAACAGATTCAGACGGGAGAGGGAAGGAAGGCGCCAGAAGAAAGGAAGGGAGAGAAAAGAAGGAAAAATAATAACGCTATGCGTTTTCGCTGGTGGTGGTGCCGGCGGCGACAGTCGGGGAGTAGAGGTACCGGACCGGCGGCCTCAAATGCTCTGCACAAACTTAGTCAGGAAGAAGAAGGTCGTTAATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACTGACGTCCTTCAGTGTCTAACTTACACCCCTCCTCTTGCCAATTTCTGCCTCCGCAACCAGCACTCCTCTCTCTGCGATTCTGCTTCCTCCGACGCCGACCGAAAGCGCGAATGTCCGTTTTGCATTCTGGAGAGGCGGATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTTTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGCTATGTCATCGACGCTTGTCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGCAGCTACAATGGTGGAGCTACCAGTGGAAGCTCCACCGTCGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAATTTTAGATGGCAGTAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTCGTGGCTAGGAAGCAGATGTCAATACTCCAAGCACCAAATATACTTGTCATCCAATTGAAGAGATTTGAAGGCATATTTGGTGGTAAGATTGACAAGGCCATTGCATATGAGGAAAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGATTTGCGGCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCTGCAGAATCCGGACATTATTATGCATATATCAAGGATGCATCGGGTAGGTGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACAAACCAAAGGCCAGTAACTGCCAGCACAGCTCTTGCTTTCAATGGTGTAAAATCCCATGAATGTAATGGCAGTGATGGATCCAAAATCTCAAAACCTTCAGTTGTAACTAAAACAACAACACAGACAAGATCCCATGTTGAGCGATCTTCTCGGAAGGAACTTTCAAATTTATCTAAGGTAGATAAACCAACTTTCAGCCCACGAGGAAAGTCTAATATGATTGGACATTCTGATATGAATGGGCATTCTAATTCCATACGAGCTCCTTCCACCATTAACGGAAAGATTGTTCTTGAGAAGGATCAATCCATCAAGGAGAATGGGAAAGAGAATGTTAACTCGTTGCCTCTGGAAAATGGTGCAAGACGTAAATCTTCTGTTGGGAATGGAAATAGCAGGAAAAATTTTGAAGTTGATCATGATGTCACTGAGAGAGGACAAAAATCTGTTTTAATGAATAGTAATGGTAATGGTGGGAGTATGGGAATGAAAGCAGATAAACATGGCCTATGTGGCAGTAATCCTATGAATAACAAGTTCACTGCAGGAAGAGGGTCTGGTCATGATGAAGTGGATAATTCAGTCAACTGCTCCTCTGAGGTCAAAAGGGCCAAAAGAAAGTCAGACTTCTGTATCTTGTTTCAACAGGATGCTCAATCTCGGCAAAGAGTTGAAGAGCTGAAACAAAATCTCAAGAGAGAAACTTTATCAGTTTTACGATCATGCGGTTGGTTAGAGGAGGTCTTCAGTTGCATGCGTTCAAGGAAGAGATTATGTTTACGGGAAATGGACAGCACCCCAAGTAGTAATGATTTAAAGAAATTGCTGATTGCAGATGCCAAACAAAAGTTTATTTCACGGATACCAGAACCTATAAAAGAAGACCTTATTAAAAAGCTTCAACTATTTAGCCAAGAAAAGATTTTTGGCTTACAGTCATTATGTCGTGGATGCATTACGAATTTTCCTTCAAAGAAGAAATATAGGCAAACTGCGGGAGTGAAACATATCTATGCTTTCATTGAGTTAACATTTTTACCATTAGGCTCTTGTGGCAGCCTACAGTTGGAAATATTTCGGGCGACACTGCTTTCAAAGGCATTCGAAAGTCATTCGGGATGGAGCCGTTCTGAAAGTAGAAGGCAAACAGCTGAGAATCAGTTGATGATGTGCGTTAAGGACATCGTGAGTCTGTCATCTTATCCAACCACCCAGAAGTGCAAGGGGTTGCAGCTTCTGCCTGCTTCTTCTCCAAACTCAAATGAGGCACTTTCCTCAACAATGGAAGAATTGGTTTTTTTCGATATACATCATCTGGTTTTCCTTGGTTCTATGTACTTTGACATCTAA 2535 43.39 MSCSCDKERKFADGRNRFRREREGRRQKKGRERKEGKIITLCVFAGGGAGGDSRGVEVPDRRPQMLCTNLVRKKKVVNGLAIANELATEFTDVLQCLTYTPPLANFCLRNQHSSLCDSASSDADRKRECPFCILERRIVRSLSLDLTLDSPFKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGSYNGGATSGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEILDGSNKYKCDNCKKLVVARKQMSILQAPNILVIQLKRFEGIFGGKIDKAIAYEESLQLSNFMCKGSQDLRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTASTALAFNGVKSHECNGSDGSKISKPSVVTKTTTQTRSHVERSSRKELSNLSKVDKPTFSPRGKSNMIGHSDMNGHSNSIRAPSTINGKIVLEKDQSIKENGKENVNSLPLENGARRKSSVGNGNSRKNFEVDHDVTERGQKSVLMNSNGNGGSMGMKADKHGLCGSNPMNNKFTAGRGSGHDEVDNSVNCSSEVKRAKRKSDFCILFQQDAQSRQRVEELKQNLKRETLSVLRSCGWLEEVFSCMRSRKRLCLREMDSTPSSNDLKKLLIADAKQKFISRIPEPIKEDLIKKLQLFSQEKIFGLQSLCRGCITNFPSKKKYRQTAGVKHIYAFIELTFLPLGSCGSLQLEIFRATLLSKAFESHSGWSRSESRRQTAENQLMMCVKDIVSLSSYPTTQKCKGLQLLPASSPNSNEALSSTMEELVFFDIHHLVFLGSMYFDI 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26894648 26906985 + CePI673135_07g011530.1 Cec07g1153 207932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1153 844 Gene3D Cysteine proteinases 90 397 - -
Cec07g1153 844 SUPERFAMILY Cysteine proteinases 93 394 IPR038765 -
Cec07g1153 844 MobiDBLite consensus disorder prediction 419 483 - -
Cec07g1153 844 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 83 417 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Cec07g1153 844 MobiDBLite consensus disorder prediction 497 561 - -
Cec07g1153 844 FunFam Ubiquitin carboxyl-terminal hydrolase 25 81 397 - -
Cec07g1153 844 CDD Peptidase_C19E 93 393 - -
Cec07g1153 844 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 337 355 IPR018200 GO:0004843(InterPro)
Cec07g1153 844 MobiDBLite consensus disorder prediction 419 438 - -
Cec07g1153 844 MobiDBLite consensus disorder prediction 439 453 - -
Cec07g1153 844 MobiDBLite consensus disorder prediction 465 483 - -
Cec07g1153 844 MobiDBLite consensus disorder prediction 503 528 - -
Cec07g1153 844 Pfam Ubiquitin carboxyl-terminal hydrolase 93 392 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cec07g1153 844 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 78 395 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1153 K11855 - - csv:101218797 1100.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1467 Cec-Chr2:32121258 Cec07g1153 Cec-Chr7:26894648 1.90E-18 dispersed
Cec07g1153 Cec-Chr7:26894648 Cec11g1506 Cec-Chr11:29269949 7.70E-50 dispersed
Cec07g1153 Cec-Chr7:26894648 Cec08g1206 Cec-Chr8:23992510 1.80E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41