Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1186 ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGTCGGAAGGCGGTCATCGTTCGCGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTAGTCGCCGGAATAAAAAAGTACCCGGCCAAGGTCATCCGCAAGGACTCAGCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAACTCGTCAACTACAGGCACCTGATGCCCACCAGGACAAGAAGGTCACCGCCGCCAAGGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGAAGTGGGTCGTTCAGTTATGGAGTTTGATTGCAATATCCCTTTGCTAATCAATTGCTTCCACTGCAAGGATTCATCCATGAATTGTGTATTTTCCATTGCGTTTCATTTTGTTTTCATGGTATATTCTGTTAGGGCACTGAATGCAGGTTGA 501 49.9 MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRTRRSPPPRRPRRGSRKGSKPGRTGGFSPSSGSEVGRSVMEFDCNIPLLINCFHCKDSSMNCVFSIAFHFVFMVYSVRALNAG 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27253010 27254763 + CePI673135_07g011860.1 Cec07g1186 207965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1186 166 SMART kow_9 4 31 IPR005824 -
Cec07g1186 166 Pfam KOW motif 8 37 IPR005824 -
Cec07g1186 166 PANTHER 60S RIBOSOMAL PROTEIN L27 1 85 IPR001141 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0022625(PANTHER)
Cec07g1186 166 Pfam Ribosomal L27e protein family 52 84 IPR001141 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cec07g1186 166 CDD KOW_RPL27 6 81 IPR041991 -
Cec07g1186 166 MobiDBLite consensus disorder prediction 82 118 - -
Cec07g1186 166 Gene3D - 1 89 IPR038655 -
Cec07g1186 166 MobiDBLite consensus disorder prediction 85 102 - -
Cec07g1186 166 SUPERFAMILY Translation proteins SH3-like domain 2 88 IPR008991 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1186 K02901 - - csv:101212658 162.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1186 Cec-Chr7:27253010 Cec11g1731 Cec-Chr11:31574694 2.50E-37 dispersed
Cec07g1185 Cec-Chr7:27247682 Cec07g1186 Cec-Chr7:27253010 8.00E-42 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1007 . . . . . . . . Cmo16g00527 Cmo04g00662 Cma01g01332 . . . . . . . . . . . . . Cla11g01639 Cam11g1705 Cec11g1731 Cco11g1727 Clacu11g1861 Cmu11g1673 Cre11g2088 . . . . Lsi04g01921 . . Cme07g00692 . . . . . . . . . Cmo01g01388 Cmo09g00703 Cma04g00616 Cma16g00486 . . . . . . . . . . . Cla07g01033 Cam07g1472 Cec07g1186 Cco07g1163 Clacu07g1088 Cmu07g1076 Cre07g1452 . . Chy07g01074 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0039459 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1