Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1215 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGGATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCATAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCGGGTAATGTTAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTCATTTATCAGACAGACCTGCGAGAGGCGTGGGTGGTCAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGGCAGGTCTGCTAATTTTAGGTTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCGTGACATGGCTGGTTCTTGTGATAATTCTAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACATGAAAATGAAAGCAGTGAGATTAGACCATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCATCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTACTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACTAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTATTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTGA 1767 45.39 MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDGWDEAGVAVTTPIAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPHLSDRPARGVGGQDETQQGRDLLPASLASETHTQCYGGRSANFRLNTQPSGPSDNLQDNQSVSSTRDMAGSCDNSRVGPDGNLSLPRTLHENESSEIRPSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPIKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVK 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27649097 27652315 - CePI673135_07g012150.1 Cec07g1215 207994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1215 588 MobiDBLite consensus disorder prediction 321 372 - -
Cec07g1215 588 Pfam Ring finger domain 530 573 IPR001841 -
Cec07g1215 588 MobiDBLite consensus disorder prediction 161 202 - -
Cec07g1215 588 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 582 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 345 372 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 223 292 - -
Cec07g1215 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 578 IPR013083 -
Cec07g1215 588 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Cec07g1215 588 FunFam Putative RING zinc finger domain superfamily protein 499 578 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 49 65 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 1 79 - -
Cec07g1215 588 SUPERFAMILY RING/U-box 509 579 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 161 179 - -
Cec07g1215 588 SMART ring_2 531 572 IPR001841 -
Cec07g1215 588 MobiDBLite consensus disorder prediction 330 344 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 1 18 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 223 254 - -
Cec07g1215 588 MobiDBLite consensus disorder prediction 274 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1756 Cec-Chr4:36543668 Cec07g1215 Cec-Chr7:27649097 8.40E-09 dispersed
Cec06g1376 Cec-Chr6:27275510 Cec07g1215 Cec-Chr7:27649097 2.90E-42 dispersed
Cec07g1215 Cec-Chr7:27649097 Cec09g1172 Cec-Chr9:11856415 7.00E-10 dispersed
Cec07g1215 Cec-Chr7:27649097 Cec04g1249 Cec-Chr4:32068712 5.40E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1215 - - - 0.0