Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec07g1362 | ATGGCAAGACCTCAACAACGCTATCGAGGAGTTCGTCAAAGGCATTGGGGTTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAGTGCGCCACCTCACCTCTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCTACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCAATTCGCCCTCCGGAAATCCGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTGGGAAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG | 531 | 51.6 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHSAPPHLSSAPPSSKLLTPTLIDKLQRCRMASLQMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGGKAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29226929 | 29228297 | - | CePI673135_07g013620.1 | Cec07g1362 | 208141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec07g1362 | 176 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 4 | 106 | IPR050913 | - | |
Cec07g1362 | 176 | SUPERFAMILY | DNA-binding domain | 7 | 56 | IPR016177 | GO:0003677(InterPro) | |
Cec07g1362 | 176 | SMART | rav1_2 | 7 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1362 | 176 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1362 | 176 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1362 | 176 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1362 | 176 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1362 | 176 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 64 | - | - | |
Cec07g1362 | 176 | CDD | AP2 | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1362 | 176 | Pfam | AP2 domain | 7 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec07g1362 | Cec-Chr7:29226929 | Cec08g1402 | Cec-Chr8:25834895 | 1.40E-38 | dispersed | |
Cec07g1362 | Cec-Chr7:29226929 | Cec08g1401 | Cec-Chr8:25827623 | 1.40E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29953 | PF00847 | AP2 | 4.00E-11 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec07g1362 | - | - | - | 0.0 |