Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec07g1388 | ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACATTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAGGCTGCCGTTCTCATGAGCGGTCAAACTGCAAAAACCAACTTTCCAATGTCGACCGCCCTGGTTCGAACCGAAGCTAGAAATATTCCTCCATTTTCGTCATTGTCGACAATTCTCAACACTAAACTTCGCAAATGTTGGAAATCTTTTCCGCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGTGTTTGGCAGAGGCGTGCGGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGGATTCCGAGTAAGGGATGAGTCGCCGGAAAAGGGCGCGGAAGATCAGGTGAGACTTTCAGATGGGGCAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGA | 564 | 49.47 | MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGQTAKTNFPMSTALVRTEARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFRVRDESPEKGAEDQVRLSDGAESLDEEERAALQMIEELLNKI | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29477260 | 29478095 | + | CePI673135_07g013880.1 | Cec07g1388 | 208167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec07g1388 | 187 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1388 | 187 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 3 | 104 | IPR050913 | - | |
Cec07g1388 | 187 | MobiDBLite | consensus disorder prediction | 145 | 168 | - | - | |
Cec07g1388 | 187 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 65 | - | - | |
Cec07g1388 | 187 | Pfam | AP2 domain | 7 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1388 | 187 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1388 | 187 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1388 | 187 | Coils | Coil | 166 | 186 | - | - | |
Cec07g1388 | 187 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1388 | 187 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec07g1388 | 187 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
Cec07g1388 | 187 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g1866 | Cec-Chr5:30743518 | Cec07g1388 | Cec-Chr7:29477260 | 7.70E-51 | dispersed | |
Cec07g1388 | Cec-Chr7:29477260 | Cec08g1401 | Cec-Chr8:25827623 | 7.70E-27 | dispersed | |
Cec11g0313 | Cec-Chr11:3367401 | Cec07g1388 | Cec-Chr7:29477260 | 3.30E-46 | wgd | |
Cec06g1284 | Cec-Chr6:26016939 | Cec07g1388 | Cec-Chr7:29477260 | 2.50E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29954 | PF00847 | AP2 | 4.30E-12 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec07g1388 | - | - | - | 0.0 |