Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1388 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACATTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAGGCTGCCGTTCTCATGAGCGGTCAAACTGCAAAAACCAACTTTCCAATGTCGACCGCCCTGGTTCGAACCGAAGCTAGAAATATTCCTCCATTTTCGTCATTGTCGACAATTCTCAACACTAAACTTCGCAAATGTTGGAAATCTTTTCCGCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGTGTTTGGCAGAGGCGTGCGGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGGATTCCGAGTAAGGGATGAGTCGCCGGAAAAGGGCGCGGAAGATCAGGTGAGACTTTCAGATGGGGCAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGA 564 49.47 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGQTAKTNFPMSTALVRTEARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFRVRDESPEKGAEDQVRLSDGAESLDEEERAALQMIEELLNKI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29477260 29478095 + CePI673135_07g013880.1 Cec07g1388 208167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1388 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g1388 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 104 IPR050913 -
Cec07g1388 187 MobiDBLite consensus disorder prediction 145 168 - -
Cec07g1388 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cec07g1388 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g1388 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g1388 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g1388 187 Coils Coil 166 186 - -
Cec07g1388 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g1388 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec07g1388 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cec07g1388 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1866 Cec-Chr5:30743518 Cec07g1388 Cec-Chr7:29477260 7.70E-51 dispersed
Cec07g1388 Cec-Chr7:29477260 Cec08g1401 Cec-Chr8:25827623 7.70E-27 dispersed
Cec11g0313 Cec-Chr11:3367401 Cec07g1388 Cec-Chr7:29477260 3.30E-46 wgd
Cec06g1284 Cec-Chr6:26016939 Cec07g1388 Cec-Chr7:29477260 2.50E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29954 PF00847 AP2 4.30E-12 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1388 - - - 0.0