Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1494 ATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGACCAACTATTCCGGCCAGTATTTTTCTACCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCGACGAATAGATTCGTGTGCGAGATCTGTGGCAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCACAATCTTCCATGGAAGTTGAAGCAAAGAGCAAACAAAGAGATAATAAGGAAGAAAGTTTATGTGTGCCCAGAAACAAGTTGTGTTCATCATGACCCATCAAGAGCATTAGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACAATTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCTTTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAGCCATTACATCAAACCCAATACTAATGAATAATAATAATACTAATAATACTAATAATAGTTATAATCAAAACCATCTTCTTCCTCCATTTTCTTCCACTCCCATTTCTCACTTAAACTTCCAAATTACACAACAAACCCATTTCAATCCTCCCTTAGATCATCATATGAACTCATTTTCTCTCAAAAAAGAACACCAATTACAAAATAATAATATTCCCCCATGGTCAGACTGTCCTAATTCAAGCTCAAATAATCATAATAATCATCCAATTATAAACCCTAATCATATTGTTGGTCCCACTTCTCTTCATCTAATTCCAAGTGCTTCTTCCCTTTCTTCTCCACACATGTCAGCCACAGCACTTCTTCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCCATAATACTGAGCCACCACACACAATCACTCCCCAACAACAACATTACTCTGATTCTTCTGCAACCAATAATAATACTAATAATAATACAAATTGTAATTTTGGCCTTAATTTATCCTCATCCTCCTCCTCCTCCTCACGTGACATTACTCATCAGCAACAGAATCAAATTTTGATGATGGGGAGTAGTACTAGTTGTAGTAGTACTACTGAAGCTGCAGGGCTTTCTCATGTACTGCCATTCTACAGGAATAAATCTTCTTCTTCACATGATCACCTCCTTCTTCATCATCATGCTAATTTTGATCAAGGAGGGACTTGTTTTGAATTAGATGAATTTGGAGGGGTTTTCAAGAAAAGTGATCATAATTCAAGTAGTGATCAAGCAGGATTGAGTACAAGAGATTTCTTGGGGTTAAGAGCTATTTCTCACACTGAGTTCTTGACTAATATTGCAGCTGCTGGTTATAGTACTAATTGCATCAATAATAATAATAATGTTGCTGCTCAAACTCCTCAAGCCCAAATTCAAAATCAATCCACCTGGAAAGGTTAG 1572 39.06 MEENLSNLTSASGEASACSGNHSDQIPTNYSGQYFSTPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRANKEIIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEESARAITSNPILMNNNNTNNTNNSYNQNHLLPPFSSTPISHLNFQITQQTHFNPPLDHHMNSFSLKKEHQLQNNNIPPWSDCPNSSSNNHNNHPIINPNHIVGPTSLHLIPSASSLSSPHMSATALLQKAAQMGATMSHNTEPPHTITPQQQHYSDSSATNNNTNNNTNCNFGLNLSSSSSSSSRDITHQQQNQILMMGSSTSCSSTTEAAGLSHVLPFYRNKSSSSHDHLLLHHHANFDQGGTCFELDEFGGVFKKSDHNSSSDQAGLSTRDFLGLRAISHTEFLTNIAAAGYSTNCINNNNNVAAQTPQAQIQNQSTWKG 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30546187 30548563 - CePI673135_07g014940.1 Cec07g1494 208273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1494 523 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Cec07g1494 523 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 109 143 - -
Cec07g1494 523 MobiDBLite consensus disorder prediction 1 36 - -
Cec07g1494 523 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 147 171 - -
Cec07g1494 523 Gene3D Classic Zinc Finger 67 94 - -
Cec07g1494 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 491 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec07g1494 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cec07g1494 523 FunFam protein indeterminate-domain 12-like 50 119 - -
Cec07g1494 523 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Cec07g1494 523 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 174 210 - -
Cec07g1494 523 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Cec07g1494 523 Gene3D Classic Zinc Finger 125 206 - -
Cec07g1494 523 MobiDBLite consensus disorder prediction 1 55 - -
Cec07g1494 523 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cec07g1494 523 SMART c2h2final6 148 168 IPR013087 -
Cec07g1494 523 SMART c2h2final6 113 143 IPR013087 -
Cec07g1494 523 SMART c2h2final6 71 93 IPR013087 -
Cec07g1494 523 MobiDBLite consensus disorder prediction 335 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1030 Cec-Chr4:29882504 Cec07g1494 Cec-Chr7:30546187 8.50E-90 dispersed
Cec07g1494 Cec-Chr7:30546187 Cec10g2045 Cec-Chr10:35188726 7.50E-88 dispersed
Cec02g1072 Cec-Chr2:20380393 Cec07g1494 Cec-Chr7:30546187 5.10E-90 transposed
Cec09g0710 Cec-Chr9:6352375 Cec07g1494 Cec-Chr7:30546187 8.60E-89 transposed
Cec07g1494 Cec-Chr7:30546187 Cec09g0068 Cec-Chr9:572197 1.40E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29964 PF00096 zf-C2H2 0.0023 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1494 K25870 - csv:101204728 691.419