Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec07g1507 | ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAGACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAAGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCGTACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTGGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGACTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAGGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAAAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTCGTTATTAACTACGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCTATCAACTTTGTAACGACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA | 2046 | 44.57 | MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPRQKDVRQRISQQTMGAVMPSRETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL | 681 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30669075 | 30678434 | + | CePI673135_07g015070.1 | Cec07g1507 | 208286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec07g1507 | 681 | SUPERFAMILY | Homeodomain-like | 2 | 59 | IPR009057 | - | |
Cec07g1507 | 681 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 520 | 681 | IPR001650 | - | |
Cec07g1507 | 681 | Gene3D | - | 110 | 195 | IPR036388 | - | |
Cec07g1507 | 681 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 339 | 509 | IPR014001 | - | |
Cec07g1507 | 681 | SMART | h15plus2 | 111 | 176 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cec07g1507 | 681 | Gene3D | - | 298 | 516 | IPR027417 | - | |
Cec07g1507 | 681 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
Cec07g1507 | 681 | SMART | ultradead3 | 327 | 524 | IPR014001 | - | |
Cec07g1507 | 681 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 377 | 662 | IPR027417 | - | |
Cec07g1507 | 681 | Gene3D | - | 517 | 681 | IPR027417 | - | |
Cec07g1507 | 681 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 455 | 463 | IPR000629 | - | |
Cec07g1507 | 681 | FunFam | Telomere repeat-binding factor 1 | 8 | 87 | - | - | |
Cec07g1507 | 681 | SUPERFAMILY | Winged helix DNA-binding domain | 110 | 190 | IPR036390 | - | |
Cec07g1507 | 681 | CDD | DEADc_EIF4A | 313 | 510 | - | - | |
Cec07g1507 | 681 | SMART | helicmild6 | 561 | 642 | IPR001650 | - | |
Cec07g1507 | 681 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 113 | 181 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cec07g1507 | 681 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
Cec07g1507 | 681 | MobiDBLite | consensus disorder prediction | 196 | 210 | - | - | |
Cec07g1507 | 681 | FunFam | Eukaryotic initiation factor 4A-III | 516 | 681 | - | - | |
Cec07g1507 | 681 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
Cec07g1507 | 681 | CDD | SANT_TRF | 6 | 56 | - | - | |
Cec07g1507 | 681 | Gene3D | - | 8 | 86 | - | - | |
Cec07g1507 | 681 | MobiDBLite | consensus disorder prediction | 189 | 210 | - | - | |
Cec07g1507 | 681 | Pfam | Helicase conserved C-terminal domain | 534 | 642 | IPR001650 | - | |
Cec07g1507 | 681 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 308 | 336 | IPR014014 | GO:0003724(InterPro) | |
Cec07g1507 | 681 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
Cec07g1507 | 681 | CDD | SF2_C_DEAD | 521 | 651 | - | - | |
Cec07g1507 | 681 | FunFam | Eukaryotic initiation factor 4A-II | 296 | 515 | - | - | |
Cec07g1507 | 681 | Pfam | linker histone H1 and H5 family | 115 | 174 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cec07g1507 | 681 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 302 | 667 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Cec07g1507 | 681 | Pfam | DEAD/DEAH box helicase | 333 | 495 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cec07g1507 | 681 | SMART | sant | 4 | 59 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g1928 | Cec-Chr6:32676692 | Cec07g1507 | Cec-Chr7:30669075 | 4.20E-45 | dispersed | |
Cec07g1507 | Cec-Chr7:30669075 | Cec10g1195 | Cec-Chr10:26037240 | 9.90E-141 | dispersed | |
Cec03g0288 | Cec-Chr3:3246497 | Cec07g1507 | Cec-Chr7:30669075 | 2.40E-06 | transposed | |
Cec04g1456 | Cec-Chr4:34129150 | Cec07g1507 | Cec-Chr7:30669075 | 1.20E-16 | transposed | |
Cec04g2186 | Cec-Chr4:39615178 | Cec07g1507 | Cec-Chr7:30669075 | 3.40E-24 | transposed | |
Cec05g0193 | Cec-Chr5:1608330 | Cec07g1507 | Cec-Chr7:30669075 | 6.50E-73 | transposed | |
Cec05g2730 | Cec-Chr5:37816185 | Cec07g1507 | Cec-Chr7:30669075 | 4.40E-12 | transposed | |
Cec08g1370 | Cec-Chr8:25606474 | Cec07g1507 | Cec-Chr7:30669075 | 7.90E-63 | transposed | |
Cec10g1028 | Cec-Chr10:23123587 | Cec07g1507 | Cec-Chr7:30669075 | 3.00E-26 | transposed | |
Cec01g0826 | Cec-Chr1:9228437 | Cec07g1507 | Cec-Chr7:30669075 | 2.20E-18 | transposed | |
Cec07g1507 | Cec-Chr7:30669075 | Cec09g0077 | Cec-Chr9:628920 | 8.50E-233 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29965 | PF00270 | DEAD | 1.10E-39 | CL0023 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec07g1507 | K03257 | - | csv:101223055 | 817.379 |