Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1507 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAGACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAAGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCGTACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTGGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGACTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAGGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAAAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTCGTTATTAACTACGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCTATCAACTTTGTAACGACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2046 44.57 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPRQKDVRQRISQQTMGAVMPSRETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30669075 30678434 + CePI673135_07g015070.1 Cec07g1507 208286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1507 681 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cec07g1507 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 681 IPR001650 -
Cec07g1507 681 Gene3D - 110 195 IPR036388 -
Cec07g1507 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 509 IPR014001 -
Cec07g1507 681 SMART h15plus2 111 176 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cec07g1507 681 Gene3D - 298 516 IPR027417 -
Cec07g1507 681 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cec07g1507 681 SMART ultradead3 327 524 IPR014001 -
Cec07g1507 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 662 IPR027417 -
Cec07g1507 681 Gene3D - 517 681 IPR027417 -
Cec07g1507 681 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 455 463 IPR000629 -
Cec07g1507 681 FunFam Telomere repeat-binding factor 1 8 87 - -
Cec07g1507 681 SUPERFAMILY Winged helix DNA-binding domain 110 190 IPR036390 -
Cec07g1507 681 CDD DEADc_EIF4A 313 510 - -
Cec07g1507 681 SMART helicmild6 561 642 IPR001650 -
Cec07g1507 681 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cec07g1507 681 FunFam Telomere repeat-binding factor 1 2 58 - -
Cec07g1507 681 MobiDBLite consensus disorder prediction 196 210 - -
Cec07g1507 681 FunFam Eukaryotic initiation factor 4A-III 516 681 - -
Cec07g1507 681 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cec07g1507 681 CDD SANT_TRF 6 56 - -
Cec07g1507 681 Gene3D - 8 86 - -
Cec07g1507 681 MobiDBLite consensus disorder prediction 189 210 - -
Cec07g1507 681 Pfam Helicase conserved C-terminal domain 534 642 IPR001650 -
Cec07g1507 681 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724(InterPro)
Cec07g1507 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cec07g1507 681 CDD SF2_C_DEAD 521 651 - -
Cec07g1507 681 FunFam Eukaryotic initiation factor 4A-II 296 515 - -
Cec07g1507 681 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cec07g1507 681 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 302 667 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cec07g1507 681 Pfam DEAD/DEAH box helicase 333 495 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec07g1507 681 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1928 Cec-Chr6:32676692 Cec07g1507 Cec-Chr7:30669075 4.20E-45 dispersed
Cec07g1507 Cec-Chr7:30669075 Cec10g1195 Cec-Chr10:26037240 9.90E-141 dispersed
Cec03g0288 Cec-Chr3:3246497 Cec07g1507 Cec-Chr7:30669075 2.40E-06 transposed
Cec04g1456 Cec-Chr4:34129150 Cec07g1507 Cec-Chr7:30669075 1.20E-16 transposed
Cec04g2186 Cec-Chr4:39615178 Cec07g1507 Cec-Chr7:30669075 3.40E-24 transposed
Cec05g0193 Cec-Chr5:1608330 Cec07g1507 Cec-Chr7:30669075 6.50E-73 transposed
Cec05g2730 Cec-Chr5:37816185 Cec07g1507 Cec-Chr7:30669075 4.40E-12 transposed
Cec08g1370 Cec-Chr8:25606474 Cec07g1507 Cec-Chr7:30669075 7.90E-63 transposed
Cec10g1028 Cec-Chr10:23123587 Cec07g1507 Cec-Chr7:30669075 3.00E-26 transposed
Cec01g0826 Cec-Chr1:9228437 Cec07g1507 Cec-Chr7:30669075 2.20E-18 transposed
Cec07g1507 Cec-Chr7:30669075 Cec09g0077 Cec-Chr9:628920 8.50E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29965 PF00270 DEAD 1.10E-39 CL0023 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1507 K03257 - csv:101223055 817.379