Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1541 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGGTCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATTTCTAAGTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATTCACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCTCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACGTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTACCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGTTTTTCCAAAGCTTTCGAGTATTTTTCCCCTGAACATCCTCAAATACGAGGCCACATCTTTCCACACCTTTATGCTCTTTCTTCTGAATTCTGATGCCCACAAGCCCAGACCTCAATTATGGATGAAAGAGCTCTCAACCTGGAACCTCAGCTTTAAAGGAACGTCAAGAAAGAGGAATATATGGATTGGCTCTCCCTCATGGGTCAGATTGAAGCATGTTCCCCAACCAATTGCCTGTTTTTATGGACATGGCCTATGGACCCTTCCGGCTCTTTCACTTGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGACGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCACATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAGTGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAGCCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTGACAATGTCTGGCCAATATACATTAAAAAGCGATGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGCAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGATGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2463 43.77 MVKKWSWGEPLLLVSICILGWRVSFINGATDPGDVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTFLSNLDVSNNNLGPDIPYSLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTRPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQVFPKLSSIFPLNILKYEATSFHTFMLFLLNSDAHKPRPQLWMKELSTWNLSFKGTSRKRNIWIGSPSWVRLKHVPQPIACFYGHGLWTLPALSLDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSHSIADLQMATGSFSVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFIANLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30982735 30989135 + CePI673135_07g015410.1 Cec07g1541 208320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1541 820 SUPERFAMILY Protein kinase-like (PK-like) 496 787 IPR011009 -
Cec07g1541 820 Gene3D Ribonuclease Inhibitor 31 251 IPR032675 -
Cec07g1541 820 CDD STKc_IRAK 521 790 - -
Cec07g1541 820 Gene3D Transferase(Phosphotransferase) domain 1 594 810 - -
Cec07g1541 820 PANTHER LEUCINE RICH REPEAT KINASE 2 298 789 IPR051420 -
Cec07g1541 820 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 479 592 - -
Cec07g1541 820 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
Cec07g1541 820 SUPERFAMILY L domain-like 30 236 - -
Cec07g1541 820 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cec07g1541 820 MobiDBLite consensus disorder prediction 798 820 - -
Cec07g1541 820 ProSiteProfiles Protein kinase domain profile. 515 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec07g1541 820 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 593 801 - -
Cec07g1541 820 MobiDBLite consensus disorder prediction 805 820 - -
Cec07g1541 820 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515(InterPro)
Cec07g1541 820 Gene3D Phosphorylase Kinase; domain 1 476 592 - -
Cec07g1541 820 Pfam Protein tyrosine and serine/threonine kinase 517 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0135 Cec-Chr2:1385850 Cec07g1541 Cec-Chr7:30982735 2.00E-104 dispersed
Cec04g1985 Cec-Chr4:38050326 Cec07g1541 Cec-Chr7:30982735 1.20E-118 dispersed
Cec07g1541 Cec-Chr7:30982735 Cec07g1703 Cec-Chr7:32612945 1.90E-69 dispersed
Cec01g0983 Cec-Chr1:13367733 Cec07g1541 Cec-Chr7:30982735 2.90E-143 transposed
Cec08g0512 Cec-Chr8:15060697 Cec07g1541 Cec-Chr7:30982735 3.90E-164 transposed
Cec10g1755 Cec-Chr10:32243901 Cec07g1541 Cec-Chr7:30982735 9.10E-98 transposed
Cec03g1566 Cec-Chr3:33778080 Cec07g1541 Cec-Chr7:30982735 1.80E-48 wgd
Cec07g1541 Cec-Chr7:30982735 Cec09g0147 Cec-Chr9:1305249 2.30E-192 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g0135 . 65 817 Strubbelig Receptor Gene Family AT4G03390 62.2 5.5e-204 708.0
Cec04g1985 . 17 752 Strubbelig Receptor Gene Family AT4G03390 52.1 8.6e-165 577.8
Cec09g0147 . 470 764 Strubbelig Receptor Gene Family AT4G03390 58.7 5.7e-92 335.9
Cec10g1755 . 73 798 Strubbelig Receptor Gene Family AT5G06820 53.8 6.4e-186 647.9
Cec08g0512 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 1.4e-193 673.3
Cec09g0147 . 101 767 Strubbelig Receptor Gene Family AT1G78980 50.1 1.5e-120 430.6
Cec08g0512 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 3.2e-147 519.2
Cec09g0147 . 99 762 Strubbelig Receptor Gene Family AT3G13065 50.6 3.5e-101 366.3
Cec01g0983 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cec10g1755 . 73 798 Strubbelig Receptor Gene Family AT5G06820 53.8 6.4e-186 647.9
Cec02g0135 . 65 817 Strubbelig Receptor Gene Family AT4G03390 62.2 5.5e-204 708.0
Cec04g1985 . 17 752 Strubbelig Receptor Gene Family AT4G03390 52.1 8.6e-165 577.8
Cec09g0147 . 470 764 Strubbelig Receptor Gene Family AT4G03390 58.7 5.7e-92 335.9
Cec08g0512 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 3.2e-147 519.2
Cec09g0147 . 99 762 Strubbelig Receptor Gene Family AT3G13065 50.6 3.5e-101 366.3
Cec08g0512 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 1.4e-193 673.3
Cec09g0147 . 101 767 Strubbelig Receptor Gene Family AT1G78980 50.1 1.5e-120 430.6
Cec07g1541 . 1 813 Strubbelig Receptor Gene Family AT1G53730 52.1 3.8e-199 691.8
Cec09g0147 . 95 789 Strubbelig Receptor Gene Family AT1G53730 60.7 8.0e-181 630.9
Cec08g0512 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.5 7.5e-155 544.7
Cec01g0983 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 3.4e-147 519.2
Cec09g0147 . 95 779 Strubbelig Receptor Gene Family AT3G14350 54.7 2.5e-160 562.8
Cec01g0983 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 1.4e-177 619.8
Cec07g1541 . 492 820 Strubbelig Receptor Gene Family AT4G22130 63.4 8.0e-120 427.9
Cec09g0147 . 465 781 Strubbelig Receptor Gene Family AT4G22130 63.6 6.3e-117 418.3
Cec02g0135 . 516 827 Strubbelig Receptor Gene Family AT4G22130 58.8 7.8e-107 384.8
Cec08g0512 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.1 7.8e-99 358.2
Cec04g1985 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 3.9e-98 355.9
Cec10g1755 . 459 781 Strubbelig Receptor Gene Family AT4G22130 52.3 1.4e-92 337.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72154 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Cec PK