Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1548 ATGGCACAAACCGACGACTGCGCCGTCACCGGATTTTTGTTCTCCGGCAGCCCCATTTCCATTTCCAACATAAAAATCAAGCTGTTGGTGTTAGCCGTGTGGGCTGCGCTTGTCCTGACGGGCGTCTCCTCCGACGAGCACGTGAGAAGCACGTGCGCCATGACGCTTTACCCGGAGCTTTGCGAGACGACGATATCGAGCGGAGTGGGAAGTAAGAGTTCAAAAGAGGCAATCGAATCGTCGGTGAATATTACGATTGGCGCAGTGAAGGATAACTATAAAAGGATCAAGAAATTGGTTAAGACAGGAAAGAATCTGAGAAAGCGAGAGAAGATTGCTCTCAATGACTGTCTAGAAACAGGGGAGGAGACGCTGAGAGAGCTGTATGAGGTTGTTGATGATCTCCATGAATATCCTAATAAGAAATCTCTCTCACAATACGCCGATGACCTCAAAACCTTCCTCAGTTCCGCCATTACGAATCAGGAGACATGCGTGGACGGATTCTCACACGACAAAGCCGACAAGAAGGTACGAGAGTCATTAGAAGCAGGCCTAATTCACGTCGAAAAGCTTTGTAGCGTTGCTTTAGCCTTGATTAAGAATCTAACCGACACCGACATTGCCAATCACAACAACCACCTCATCAATAGAAACCAGCTCACGGAGATCAACAATGGACGCGACCACGACGGAATTAACTGGCCCCATTGGATGTCGCCGGGCGACCGAAGGCTTTTGCAGGCGTCATCCACCGCCACTCCCGATGTGGTAGTGGCAGCCGATGGAAGTGGCAATTTCCGAACGGTGTCGGAGGCGGTTGCGGCGGCGCCGAATAGAAGTAGCCGGAGGTATATAATAAGAATAAAGGCAGGGGTTTATAGAGAAAATGTGAATGTGCCGAGTAGTAAGACGAATATAATGTTTTGGGGAGATGGAAGAACCACCACTATAATCACCGGGAACAGAAATGTCGTCGATGGCAGTACCACCTTCAACTCCGCCACCGTCGCGGCAGTGGCAGAAAGGTTCTTGGCGAGAGACATTACGTTTCAGAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCTTATCAAGACACACTCTACGTCCACTCCAACCGCCAATTCTACGTCAAATGCATAATCATCGGCACTGTCGATTTCATCTTCGGCAACGCCGCTGCCGTCATCCAAGACTGCGACATCCACGCTCGCCGCCCCAATCCCGGGCAGAGGAACATGGTGACTGCACAAGGAAGAACAGACCCAAATCAAAACACTGGGATTGTCATCCAGAAATGTCGAATCGGAACCACCTCCGATTTGCAGCCGGTGATCAGTAATGTCCCAACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGGTTATGCAGACGAGCATTAGCAATGTGATCGATCCAGCAGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTACGCGGAGTATCAGAATAGCGGGCCCGGTGCTGATACGTCAAGGAGAGTAACGTGGAAGGGGTATAGGGTTCTTACAAGTGCGGCGGAAGCTGCGGCCTTCACGGCAGGGAATTTCATCGGCGGCGGCACCTGGCTGAGATCCACTGGATTCCCATTTTCACTTGGGCTGTAA 1704 51.64 MAQTDDCAVTGFLFSGSPISISNIKIKLLVLAVWAALVLTGVSSDEHVRSTCAMTLYPELCETTISSGVGSKSSKEAIESSVNITIGAVKDNYKRIKKLVKTGKNLRKREKIALNDCLETGEETLRELYEVVDDLHEYPNKKSLSQYADDLKTFLSSAITNQETCVDGFSHDKADKKVRESLEAGLIHVEKLCSVALALIKNLTDTDIANHNNHLINRNQLTEINNGRDHDGINWPHWMSPGDRRLLQASSTATPDVVVAADGSGNFRTVSEAVAAAPNRSSRRYIIRIKAGVYRENVNVPSSKTNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVAERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVKCIIIGTVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVISNVPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAAAFTAGNFIGGGTWLRSTGFPFSLGL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31022653 31026225 + CePI673135_07g015480.1 Cec07g1548 208327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1548 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Cec07g1548 567 FunFam Pectinesterase 44 204 - -
Cec07g1548 567 CDD PMEI-like_3 50 204 - -
Cec07g1548 567 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Cec07g1548 567 Gene3D - 250 567 IPR012334 -
Cec07g1548 567 NCBIfam pectinesterase inhibitor domain 31 204 IPR006501 GO:0004857(InterPro)
Cec07g1548 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 204 IPR035513 -
Cec07g1548 567 Pfam Pectinesterase 256 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec07g1548 567 SMART PMEI_2 43 199 IPR006501 GO:0004857(InterPro)
Cec07g1548 567 Pfam Plant invertase/pectin methylesterase inhibitor 48 199 IPR006501 GO:0004857(InterPro)
Cec07g1548 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 205 IPR035513 -
Cec07g1548 567 PANTHER PECTINESTERASE 28 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec07g1548 567 SUPERFAMILY Pectin lyase-like 250 566 IPR011050 -
Cec07g1548 567 FunFam Pectinesterase 250 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1548 Cec-Chr7:31022653 Cec09g0545 Cec-Chr9:4700357 1.00E-127 dispersed
Cec07g1548 Cec-Chr7:31022653 Cec07g1549 Cec-Chr7:31032126 2.10E-99 tandem
Cec09g0860 Cec-Chr9:8088371 Cec07g1548 Cec-Chr7:31022653 1.40E-179 transposed
Cec03g1541 Cec-Chr3:33542331 Cec07g1548 Cec-Chr7:31022653 1.70E-11 wgd
Cec07g1548 Cec-Chr7:31022653 Cec09g0142 Cec-Chr9:1250167 4.90E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1548 K01051 - csv:101207996 929.472