Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1552 ATGCTCGAAGACCAGACTCTTTCAACATCTCCAATGTCAGTCACAAACTGCAGATCTCCTCTTCTTCCCCTAAAATCTGCTACATCTCTTCAAACAAAACCTCAGAGCAAGATTTTTACGCTGAAACCTATAAAGTTTTCAGTCAACAGAACTCTCCCACTCCAAATTACATCTTCGGTGAAGAACAACCTGGTTTTCGAGGACCGTTCTGATGGTGTGATTTGCTACAGAGATGAGGGTGGAGAGATTATTTGCGAAGGATATGATGACGAACAGCCTCGTATTGAGCAAGAGATTGAGAAATTACCTGGTGAAAAGTCTCATAGAAGATCAGATGGCGAATTGAAGATGGATCGTCTTCTACTGCAGCAAAATTGGGAGAAGCAGTTAGAAACCATTAATGGCGGTGCGGGAAGTGGAAGAGGAGAGCTTGGAATTCGAGCGAATGGCTACACCGAGGGATCTTCGCCAGTGCAAGTTTACTCCACTTCCTGGTTCCGCATTCGTGCAGATGCGGCCATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATCTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCATACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATATCAAGCATGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACGACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGAAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAAGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTACTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATACCTTTCTCTGAATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACATAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAACATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGAAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCACAAGGAATAATGAATCCACGGATACCTTGA 2874 43.74 MLEDQTLSTSPMSVTNCRSPLLPLKSATSLQTKPQSKIFTLKPIKFSVNRTLPLQITSSVKNNLVFEDRSDGVICYRDEGGEIICEGYDDEQPRIEQEIEKLPGEKSHRRSDGELKMDRLLLQQNWEKQLETINGGAGSGRGELGIRANGYTEGSSPVQVYSTSWFRIRADAAMLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGSNYGLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNLTVRFLICGVPCIPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMIPFSELTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGIMNPRIP 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31055297 31064150 + CePI673135_07g015520.1 Cec07g1552 208331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1552 957 SUPERFAMILY ARID-like 770 885 IPR036431 GO:0003677(InterPro)
Cec07g1552 957 ProSiteProfiles ARID domain profile. 770 874 IPR001606 GO:0003677(InterPro)
Cec07g1552 957 Pfam ARID/BRIGHT DNA binding domain 773 870 IPR001606 GO:0003677(InterPro)
Cec07g1552 957 CDD ARID 772 870 - -
Cec07g1552 957 CDD PHD_ARID4_like 880 931 - -
Cec07g1552 957 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 180 952 IPR042293 -
Cec07g1552 957 MobiDBLite consensus disorder prediction 627 646 - -
Cec07g1552 957 Gene3D - 763 880 IPR036431 GO:0003677(InterPro)
Cec07g1552 957 SMART ARID_2 767 870 - -
Cec07g1552 957 SUPERFAMILY FYVE/PHD zinc finger 866 934 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1552 Cec-Chr7:31055297 Cec09g0140 Cec-Chr9:1233090 2.10E-19 dispersed
Cec07g1552 Cec-Chr7:31055297 Cec09g0134 Cec-Chr9:1192092 4.60E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29970 PF01388 ARID 9.60E-14 CL0123 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1552 - - - 0.0