Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1552 ATGCTCGAAGACCAGACTCTTTCAACATCTCCAATGTCAGTCACAAACTGCAGATCTCCTCTTCTTCCCCTAAAATCTGCTACATCTCTTCAAACAAAACCTCAGAGCAAGATTTTTACGCTGAAACCTATAAAGTTTTCAGTCAACAGAACTCTCCCACTCCAAATTACATCTTCGGTGAAGAACAACCTGGTTTTCGAGGACCGTTCTGATGGTGTGATTTGCTACAGAGATGAGGGTGGAGAGATTATTTGCGAAGGATATGATGACGAACAGCCTCGTATTGAGCAAGAGATTGAGAAATTACCTGGTGAAAAGTCTCATAGAAGATCAGATGGCGAATTGAAGATGGATCGTCTTCTACTGCAGCAAAATTGGGAGAAGCAGTTAGAAACCATTAATGGCGGTGCGGGAAGTGGAAGAGGAGAGCTTGGAATTCGAGCGAATGGCTACACCGAGGGATCTTCGCCAGTGCAAGTTTACTCCACTTCCTGGTTCCGCATTCGTGCAGATGCGGCCATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATCTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCATACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATATCAAGCATGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACGACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGAAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAAGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTACTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATACCTTTCTCTGAATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACATAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAACATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGAAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCACAAGGAATAATGAATCCACGGATACCTTGA 2874 43.74 MLEDQTLSTSPMSVTNCRSPLLPLKSATSLQTKPQSKIFTLKPIKFSVNRTLPLQITSSVKNNLVFEDRSDGVICYRDEGGEIICEGYDDEQPRIEQEIEKLPGEKSHRRSDGELKMDRLLLQQNWEKQLETINGGAGSGRGELGIRANGYTEGSSPVQVYSTSWFRIRADAAMLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGSNYGLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNLTVRFLICGVPCIPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMIPFSELTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGIMNPRIP 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31055297 31064150 + CePI673135_07g015520.1 Cec07g1552 208331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1552 957 SUPERFAMILY ARID-like 770 885 IPR036431 GO:0003677(InterPro)
Cec07g1552 957 ProSiteProfiles ARID domain profile. 770 874 IPR001606 GO:0003677(InterPro)
Cec07g1552 957 Pfam ARID/BRIGHT DNA binding domain 773 870 IPR001606 GO:0003677(InterPro)
Cec07g1552 957 CDD ARID 772 870 - -
Cec07g1552 957 CDD PHD_ARID4_like 880 931 - -
Cec07g1552 957 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 180 952 IPR042293 -
Cec07g1552 957 MobiDBLite consensus disorder prediction 627 646 - -
Cec07g1552 957 Gene3D - 763 880 IPR036431 GO:0003677(InterPro)
Cec07g1552 957 SMART ARID_2 767 870 - -
Cec07g1552 957 SUPERFAMILY FYVE/PHD zinc finger 866 934 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1552 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1552 Cec-Chr7:31055297 Cec09g0140 Cec-Chr9:1233090 2.10E-19 dispersed
Cec07g1552 Cec-Chr7:31055297 Cec09g0134 Cec-Chr9:1192092 4.60E-301 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g0816 . 90 441 ARID Transcription Factor Family AT1G04880 58.4 9.5e-108 387.5
Cec10g0009 . 324 594 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cec05g1699 . 16 309 ARID Transcription Factor Family AT1G76110 68.1 1.1e-111 400.2
Cec10g0009 . 303 624 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cec07g1552 . 174 954 ARID Transcription Factor Family AT3G43240 59.0 3.7e-266 914.4
Cec09g0134 . 92 853 ARID Transcription Factor Family AT3G43240 58.5 7.5e-259 890.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29970 PF01388 ARID 9.60E-14 CL0123 Cec TR