Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec07g1583 | ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAGCGTGCACCCATTTTAAGTCACTTGGATTCTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGTTCGGTTAGTGATGATGATTTACACAATCTTATTGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTAGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTCTATGCCATGGCTGTCTTAGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCACGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA | 789 | 42.08 | MQLVPNHDENKDDILERAPILSHLDSLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLIVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY | 262 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 31335696 | 31337461 | - | CePI673135_07g015830.1 | Cec07g1583 | 208362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec07g1583 | 262 | Pfam | RING-variant domain | 75 | 122 | IPR011016 | GO:0008270(InterPro) | |
| Cec07g1583 | 262 | SUPERFAMILY | RING/U-box | 70 | 126 | - | - | |
| Cec07g1583 | 262 | SMART | ringv_2 | 74 | 123 | IPR011016 | GO:0008270(InterPro) | |
| Cec07g1583 | 262 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 127 | IPR013083 | - | |
| Cec07g1583 | 262 | CDD | RING_CH-C4HC3_MARCH | 75 | 123 | - | - | |
| Cec07g1583 | 262 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 194 | 262 | - | - | |
| Cec07g1583 | 262 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 67 | 129 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec06g1234 | Cec-Chr6:25322286 | Cec07g1583 | Cec-Chr7:31335696 | 3.60E-37 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec07g1583 | - | - | - | 0.0 |