Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1624 ATGGCCGTCTCCAAATTCTCCGTCGCCGTCCTCCTCCTCTTAGCCTTTTTATTCCTTAACGGAGCCGAATCTCAGTTTCTTTGCAAAAGCTCCTCCTGCAATGGAGTTTCCTCGCCGGACGTTCGATTTCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACAAGCCAGATTTCGACCTGTTCTGCAACAATCGAAACCAGACGATTCTGAATCTCCCGAACGCCGGAGACCTCGTAGTGGAGATTATCGATTACAGGTTTCAGAGGTTGTGGATCAACGATCCGGATCAATGCTTTCCGAGACGAATACTAATAGACTCTTTCAATTTAGAGAACTCGCCGTTCATTTATAATTATCGATTCGATGAATTCACCGTTCTCAACTGCTCCTATTACGTCCAAACGCTACCGTTCGATCGCGTCCGGAAGATCAAATGTATGAGCGGCGGAAACCACACTGTAATCAATGTGCCAAACAGGGACCTAAAGGCGGTTACAGATTTCCTACCGTCGCCGTGTAAAGTGATTGCGACGAAGAAGCTTCCGTTAACAGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGCTTGCGGAAACTGCGAGACGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGGTGAAGTCGTGTGTTTCAATCTTCCAAAAAGCGGAATTCCACGAGGTGCAAAATATGGGTTGATCATCGGTGTGGGAATCCCAGGAGTCCTCTTCATAATTGGGTTGGTCTGTTACATTTGTGGCAGGTTCAAGGCCTTTGCCCGATCCAATCGTCCAACATCACACCTTTCTCTTTCGTTGGGCCACCAACCCAGTTTTACCAAAGCAGGCCTCGATGGTTCGACAATTGAATCATTCCCCAAGACAACACTGGGGCAGAGCAGACGACTTCCAAAGTCCAACGACACCACATGCGCCATATGCTTGTCAGAGTACCAGTCAAAGGAGACAATTAGAACCATACCAGATTGTGGTCACTTTTTCCATGCCAAATGCATTGATGAGTGGCTTAAATTGAACGCCACGTGTCCAGTCTGTCGGACCTCGCCCGAGGATTCCTCTTGCACCTCCACGCCTTCTCGATCCATGTCAGTACCAACGTCGCCGCAATCAGTAGCATCATTGCCACATCATCACTAG 1185 48.78 MAVSKFSVAVLLLLAFLFLNGAESQFLCKSSSCNGVSSPDVRFPFRLKNSQDSRCGYKPDFDLFCNNRNQTILNLPNAGDLVVEIIDYRFQRLWINDPDQCFPRRILIDSFNLENSPFIYNYRFDEFTVLNCSYYVQTLPFDRVRKIKCMSGGNHTVINVPNRDLKAVTDFLPSPCKVIATKKLPLTGMELEEGMVVRWSEPACGNCETRGGDCGFKSNSSGEVVCFNLPKSGIPRGAKYGLIIGVGIPGVLFIIGLVCYICGRFKAFARSNRPTSHLSLSLGHQPSFTKAGLDGSTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHAKCIDEWLKLNATCPVCRTSPEDSSCTSTPSRSMSVPTSPQSVASLPHHH 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31773142 31777036 - CePI673135_07g016240.1 Cec07g1624 208403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1624 394 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Cec07g1624 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 367 IPR013083 -
Cec07g1624 394 CDD RING-H2_EL5-like 320 362 - -
Cec07g1624 394 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 366 IPR046948 -
Cec07g1624 394 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247(InterPro)
Cec07g1624 394 SMART ring_2 320 361 IPR001841 -
Cec07g1624 394 Pfam Wall-associated receptor kinase C-terminal 188 227 IPR032872 -
Cec07g1624 394 Pfam Ring finger domain 319 362 IPR001841 -
Cec07g1624 394 MobiDBLite consensus disorder prediction 365 394 - -
Cec07g1624 394 SUPERFAMILY RING/U-box 314 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1624 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1624 Cec-Chr7:31773142 Cec08g1098 Cec-Chr8:22811002 4.40E-24 dispersed
Cec01g0661 Cec-Chr1:7201385 Cec07g1624 Cec-Chr7:31773142 6.10E-09 transposed
Cec05g0210 Cec-Chr5:1711977 Cec07g1624 Cec-Chr7:31773142 7.10E-11 transposed
Cec09g2247 Cec-Chr9:39341623 Cec07g1624 Cec-Chr7:31773142 8.90E-11 transposed
Cec10g0360 Cec-Chr10:4268197 Cec07g1624 Cec-Chr7:31773142 4.60E-10 transposed
Cec10g1676 Cec-Chr10:31267463 Cec07g1624 Cec-Chr7:31773142 9.20E-10 transposed
Cec05g1056 Cec-Chr5:9261355 Cec07g1624 Cec-Chr7:31773142 2.40E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35