Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec07g1685 | ATGGGTATTTCACGTGACTCTATGCACAAGAGACGTGCGACAGGAGGAAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAACTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGTGACAAGTCAATCAGGAGGATCAGAGTCCGTGGTGGTAATGTTAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGCAGTGAGGCTGTGACCAGAAAGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCGTTCAAACAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGGCCTCAGCATCTGCCAAGAAGGAAGAGGAAGGTGATGCTCCCAGTGAGGAGGTGAAGAAGAGTAACCATGTCCAACGCAAGCTGGAGAAACGTCAGCAGGATCGTAAGCTTGACCCTCATATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCGGGTCAATGTGGCCGAGCAGATGGGGTTTTTCCCTCTTCCTCTTTGCCTTATTTCGACCGTCTCTCTCGCTCGATTCTTGGCTTCGCAGGTTCCTGCTCACCTCGAACACTAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGACGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATACTTGTGGGGCTTCGTGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCAGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGATTATCTTGAGTTTGAGGATGAAGATATCGACAAGATTTAG | 1107 | 47.43 | MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKASASAKKEEEGDAPSEEVKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGVFPSSSLPYFDRLSRSILGFAGSCSPRTLNMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 32444015 | 32450161 | + | CePI673135_07g016850.1 | Cec07g1685 | 208464 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec07g1685 | 368 | MobiDBLite | consensus disorder prediction | 340 | 368 | - | - | |
| Cec07g1685 | 368 | Gene3D | - | 225 | 368 | IPR012340 | - | |
| Cec07g1685 | 368 | ProSitePatterns | Ribosomal protein S8e signature. | 11 | 30 | IPR018283 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Cec07g1685 | 368 | MobiDBLite | consensus disorder prediction | 131 | 164 | - | - | |
| Cec07g1685 | 368 | CDD | Ribosomal_S8e_like | 5 | 194 | - | - | |
| Cec07g1685 | 368 | MobiDBLite | consensus disorder prediction | 221 | 247 | - | - | |
| Cec07g1685 | 368 | FunFam | 40S ribosomal protein S8 | 109 | 175 | - | - | |
| Cec07g1685 | 368 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 264 | 286 | IPR018104 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | NCBIfam | translation initiation factor eIF-1A | 237 | 333 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | SMART | eIF1neu4 | 251 | 333 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | Pfam | Translation initiation factor 1A / IF-1 | 255 | 316 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | Pfam | Ribosomal protein S8e | 5 | 194 | IPR022309 | - | |
| Cec07g1685 | 368 | PANTHER | 40S RIBOSOMAL PROTEIN S8 | 1 | 195 | IPR001047 | GO:0000462(PANTHER)|GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0022627(PANTHER) | |
| Cec07g1685 | 368 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
| Cec07g1685 | 368 | FunFam | Eukaryotic translation initiation factor 1A | 225 | 368 | - | - | |
| Cec07g1685 | 368 | Gene3D | - | 32 | 161 | - | - | |
| Cec07g1685 | 368 | Gene3D | - | 162 | 200 | - | - | |
| Cec07g1685 | 368 | NCBIfam | ribosomal protein eS8 | 1 | 194 | IPR001047 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Cec07g1685 | 368 | FunFam | 40S ribosomal protein S8 | 32 | 160 | - | - | |
| Cec07g1685 | 368 | Hamap | Translation initiation factor 1A [eif1a]. | 239 | 333 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | SUPERFAMILY | Nucleic acid-binding proteins | 225 | 367 | IPR012340 | - | |
| Cec07g1685 | 368 | ProSiteProfiles | S1 domain IF1 type profile. | 245 | 319 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | MobiDBLite | consensus disorder prediction | 345 | 368 | - | - | |
| Cec07g1685 | 368 | CDD | S1_IF1A | 256 | 332 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
| Cec07g1685 | 368 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g0257 | Cec-Chr2:2416251 | Cec07g1685 | Cec-Chr7:32444015 | 3.00E-71 | dispersed | |
| Cec07g1685 | Cec-Chr7:32444015 | Cec11g1251 | Cec-Chr11:26193906 | 1.40E-96 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec07g1685 | K02995 | - | csv:101222739 | 362.459 |